PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0393s0043.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family HD-ZIP
Protein Properties Length: 730aa    MW: 80014.7 Da    PI: 6.1533
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0393s0043.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox62.94.8e-2058113156
                          TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
             Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                          +++ +++t+ q++e+e++F+++++p+ ++r+eL+++lgL+  qVk+WFqN+R+++k
  Kalax.0393s0043.1.p  58 KKRYHRHTQRQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMK 113
                          688999***********************************************998 PP
2START216.77.9e-682464661206
                          HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S.... CS
                START   1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla.... 77 
                          ela +a++el+++a+a++p+W  s+    e++ ++e+l++f+++ +      ++ea+r+s+vv+m++ +lve+l+d++ qW+  +     
  Kalax.0393s0043.1.p 246 ELAVAAMEELIRMAQAGDPLWIPSAdnstEILCEEEYLRTFPRGIGpkplgLKSEASRESAVVIMNHINLVEILMDVN-QWSSIFSgivs 334
                          57899********************99999999**********999********************************.*********** PP

                          EEEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTC CS
                START  78 kaetlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksng 160
                          +a+tlev+s+g      galq+++ae+q++splvp R+ +fvRy++q+++g+w++vdvS+ds ++ p    v R++++pSg+li++++ng
  Kalax.0393s0043.1.p 335 RAMTLEVLSTGvagnynGALQVITAEFQVPSPLVPtRENYFVRYCKQHPDGTWAVVDVSLDSLRPSP----VTRSRRRPSGCLIQEMPNG 420
                          *****************************************************************98....7****************** PP

                          EEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
                START 161 hskvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                          +skvtwvehv+ ++r +h+++++lv+s +a+gak+wvatl+rqce+
  Kalax.0393s0043.1.p 421 YSKVTWVEHVEADDRGVHNIYKPLVNSNHAFGAKRWVATLDRQCER 466
                          ********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.4E-2237113IPR009057Homeodomain-like
SuperFamilySSF466896.27E-1943114IPR009057Homeodomain-like
PROSITE profilePS5007116.69855115IPR001356Homeobox domain
SMARTSM003893.1E-1956119IPR001356Homeobox domain
CDDcd000868.80E-1958116No hitNo description
PfamPF000461.2E-1758113IPR001356Homeobox domain
PROSITE patternPS00027090113IPR017970Homeobox, conserved site
SuperFamilySSF559617.85E-37237468No hitNo description
PROSITE profilePS5084845.015237469IPR002913START domain
CDDcd088754.18E-127241465No hitNo description
SMARTSM002344.7E-68246466IPR002913START domain
PfamPF018521.6E-56247466IPR002913START domain
Gene3DG3DSA:3.30.530.203.4E-6345450IPR023393START-like domain
SuperFamilySSF559615.89E-24485723No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009845Biological Processseed germination
GO:0009913Biological Processepidermal cell differentiation
GO:0048497Biological Processmaintenance of floral organ identity
GO:0048825Biological Processcotyledon development
GO:0005634Cellular Componentnucleus
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 730 aa     Download sequence    Send to blast
MYQPNLFVDT SHHLLLDMGH SKTPDNELGS LRDEDFESKS GTEAQSGDEQ DPNQRPKKKR  60
YHRHTQRQIQ EMEAFFKECP HPDDKQRKEL SRELGLEPLQ VKFWFQNKRT QMKGQHERHE  120
NSQLRAENEK LRADNMRYKE ALGNATCPNC GGPAAIGEMS FDEQHLRIEN ARLREEIDRI  180
SGIAAKYIGK PLVTYPHLPS RPSLEIGVGN FGPQTGGMAE GDMFGVSDLL RSVSGPTEAD  240
KPIIIELAVA AMEELIRMAQ AGDPLWIPSA DNSTEILCEE EYLRTFPRGI GPKPLGLKSE  300
ASRESAVVIM NHINLVEILM DVNQWSSIFS GIVSRAMTLE VLSTGVAGNY NGALQVITAE  360
FQVPSPLVPT RENYFVRYCK QHPDGTWAVV DVSLDSLRPS PVTRSRRRPS GCLIQEMPNG  420
YSKVTWVEHV EADDRGVHNI YKPLVNSNHA FGAKRWVATL DRQCERLASL MASNINTGDV  480
GVITRPDGRK SMLKLAERMV MSFCGGVGAS TAHTWTTLSG TSADDVRVMT RKSMDDPGRP  540
PGIVLSAATS FWIPVSSKRV FDFLRDENSR NEWDILSNGG LVQEMAHIAN GRDPGNCVSL  600
LRVNSANSSQ SNMLILQESS TDVTGSYVIY APVDIVAMNV VLNGGDPDYV ALLPSGFAIL  660
PDNGLSSLAP IGGQHGVLDV GSGGSLLTVA FQILVDSIPT AKLSLGSVAT VNSLIKCTVE  720
RIKAALSCP*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds to the L1 box DNA sequence 5'-TAAATG[CT]A-3'. Plays a role in maintaining the identity of L1 cells, possibly by interacting with their L1 box or other target-gene promoters. Functionally redundant to ATML1. {ECO:0000269|PubMed:12505995}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002266688.10.0PREDICTED: homeobox-leucine zipper protein MERISTEM L1
SwissprotQ93V990.0PDF2_ARATH; Homeobox-leucine zipper protein PROTODERMAL FACTOR 2
TrEMBLA0A438JG680.0A0A438JG68_VITVI; Homeobox-leucine zipper protein PROTODERMAL FACTOR 2
TrEMBLE0CVM00.0E0CVM0_VITVI; Uncharacterized protein
STRINGVIT_10s0116g00680.t010.0(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G04890.10.0protodermal factor 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]