PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.0391s0012.2.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

CAMTA

Protein Properties

Length: 917aa MW: 103586 Da PI: 6.94

Description

CAMTA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0391s0012.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CG-1	159	9.4e-50	26	143	2	118
CG-1 2 lke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahsee 90 l+e k+rwl+++ei+a+L n++ +++++++ + pksg+++Ly+rk++r+fr+DG++wkkk dgkt++E+he+LKvg+ e +++yYah+++ Kalax.0391s0012.2.p 26 LEEaKSRWLRPNEIHALLCNYKYFNIHAKPLNLPKSGTVVLYDRKMLRNFRRDGHNWKKKNDGKTIKEAHEHLKVGNEERIHVYYAHGHD 115 55669*********************************************************************************** PP CG-1 91 nptfqrrcywlLeeelekivlvhylevk 118 n tf rrcywlL+++le+ivlvhy+e++ Kalax.0391s0012.2.p 116 NLTFVRRCYWLLDKSLEHIVLVHYRETQ 143 ***********************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51437	73.34	22	148	IPR005559	CG-1 DNA-binding domain
SMART	SM01076	3.0E-69	25	143	IPR005559	CG-1 DNA-binding domain
Pfam	PF03859	4.9E-44	28	141	IPR005559	CG-1 DNA-binding domain
SuperFamily	SSF81296	2.29E-14	367	454	IPR014756	Immunoglobulin E-set
SuperFamily	SSF48403	5.91E-16	548	670	IPR020683	Ankyrin repeat-containing domain
CDD	cd00204	2.02E-14	552	662	No hit	No description
Gene3D	G3DSA:1.25.40.20	1.2E-15	557	667	IPR020683	Ankyrin repeat-containing domain
PROSITE profile	PS50297	16.52	561	674	IPR020683	Ankyrin repeat-containing domain
Pfam	PF00023	1.1E-4	603	634	IPR002110	Ankyrin repeat
PROSITE profile	PS50088	11.06	603	635	IPR002110	Ankyrin repeat
SMART	SM00248	4.2E-5	603	632	IPR002110	Ankyrin repeat
SMART	SM00248	370	642	673	IPR002110	Ankyrin repeat
SuperFamily	SSF52540	2.31E-6	764	838	IPR027417	P-loop containing nucleoside triphosphate hydrolase
SMART	SM00015	50	766	788	IPR000048	IQ motif, EF-hand binding site
SMART	SM00015	5.3E-4	789	811	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	10.676	790	814	IPR000048	IQ motif, EF-hand binding site
Pfam	PF00612	8.0E-5	792	811	IPR000048	IQ motif, EF-hand binding site
SuperFamily	SSF52540	2.31E-6	869	897	IPR027417	P-loop containing nucleoside triphosphate hydrolase
SMART	SM00015	6.7	869	891	IPR000048	IQ motif, EF-hand binding site
Pfam	PF00612	0.12	871	891	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	7.895	871	899	IPR000048	IQ motif, EF-hand binding site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 917 aa Download sequence Send to blast
MDAVLLAGSE IHGFHTMADL DVANMLEEAK SRWLRPNEIH ALLCNYKYFN IHAKPLNLPK 60 SGTVVLYDRK MLRNFRRDGH NWKKKNDGKT IKEAHEHLKV GNEERIHVYY AHGHDNLTFV 120 RRCYWLLDKS LEHIVLVHYR ETQEGAPDTP VNSNSSSGNS DISVHQLLSD GTDSGHVESH 180 YTGQNLYSEL GEIITEHIHE KTLHEINTLE WDELLVTNDP ANIIAPKEGT HTSSHSITSD 240 DNQEGFLLLN NISSEINPYL GYGSHNPGRG GANVKVLDEA SFLSISGQLN THLSGKNYVP 300 VNSSSLIPKE SLQNQDSFGR WMNDIIVDSP RSDENSMLEQ SLCPSHAPSG SFALRQSQSS 360 FPDQIFTITD ISPGWAFSTE NTKILLTGFF HKEYAHLAIS DITCVCGDAS VSVEVLQVGV 420 FRCFISPHKP GFVNIYLSLD GSKPISQVLT FEYRSSLSPT TLVSSEDTNK WMELRMKTRL 480 THLLYLKSKS LDILSSKLSQ NSVKEAKKFA LKTSHIANRW AYLIESLEDQ KMSFHEAQDD 540 LLELSLRNRL REWLLESIIQ GSKIAYLDDE GLGVIHMCAI LEYTWAVYLY SKSGLSLDFR 600 DKHGWTALHW AAFYGREKMT AALLSAGAKP NLVTDPTPEH PGGCTAADLA SKQGYEGVAA 660 YLAEKGLVEH FNDMSIAGNV SGSLQTYTPD PTEISTLNEE EQYLKESLAA YRTAADAAAR 720 IQTAMREHAL KVKAKAVEVA TPEAEARAIV AAMKIQHAFR NFETRKKIVA AGRIQQRFRT 780 WKIRKDFLQK RHKAIKIQAV FRGYQVRRQY RKILWSVGVL EKAILRWRLK RKGFRGLQLD 840 PDEALTKDGQ EPNGEEDFFE AGRKQAEERV ERSVIKVQAM FRSKQAQQEY QRMKLAHTQA 900 KLEYEEFVEP EMDTDS*

Sequence ? help Back to Top

Protein Sequence Length: 917 aa Download sequence Send to blast

MDAVLLAGSE IHGFHTMADL DVANMLEEAK SRWLRPNEIH ALLCNYKYFN IHAKPLNLPK  60
SGTVVLYDRK MLRNFRRDGH NWKKKNDGKT IKEAHEHLKV GNEERIHVYY AHGHDNLTFV  120
RRCYWLLDKS LEHIVLVHYR ETQEGAPDTP VNSNSSSGNS DISVHQLLSD GTDSGHVESH  180
YTGQNLYSEL GEIITEHIHE KTLHEINTLE WDELLVTNDP ANIIAPKEGT HTSSHSITSD  240
DNQEGFLLLN NISSEINPYL GYGSHNPGRG GANVKVLDEA SFLSISGQLN THLSGKNYVP  300
VNSSSLIPKE SLQNQDSFGR WMNDIIVDSP RSDENSMLEQ SLCPSHAPSG SFALRQSQSS  360
FPDQIFTITD ISPGWAFSTE NTKILLTGFF HKEYAHLAIS DITCVCGDAS VSVEVLQVGV  420
FRCFISPHKP GFVNIYLSLD GSKPISQVLT FEYRSSLSPT TLVSSEDTNK WMELRMKTRL  480
THLLYLKSKS LDILSSKLSQ NSVKEAKKFA LKTSHIANRW AYLIESLEDQ KMSFHEAQDD  540
LLELSLRNRL REWLLESIIQ GSKIAYLDDE GLGVIHMCAI LEYTWAVYLY SKSGLSLDFR  600
DKHGWTALHW AAFYGREKMT AALLSAGAKP NLVTDPTPEH PGGCTAADLA SKQGYEGVAA  660
YLAEKGLVEH FNDMSIAGNV SGSLQTYTPD PTEISTLNEE EQYLKESLAA YRTAADAAAR  720
IQTAMREHAL KVKAKAVEVA TPEAEARAIV AAMKIQHAFR NFETRKKIVA AGRIQQRFRT  780
WKIRKDFLQK RHKAIKIQAV FRGYQVRRQY RKILWSVGVL EKAILRWRLK RKGFRGLQLD  840
PDEALTKDGQ EPNGEEDFFE AGRKQAEERV ERSVIKVQAM FRSKQAQQEY QRMKLAHTQA  900
KLEYEEFVEP EMDTDS*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator (PubMed:14581622). Binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved in response to cold. Contributes together with CAMTA3 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:28351986). {ECO:0000250\|UniProtKB:Q8GSA7, ECO:0000269\|PubMed:14581622, ECO:0000269\|PubMed:28351986, ECO:0000305\|PubMed:11925432}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By heat shock, UVB, wounding, abscisic acid, H(2)O(2) and salicylic acid. {ECO:0000269\|PubMed:12218065}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028075463.1	0.0	calmodulin-binding transcription activator 5-like isoform X2
Swissprot	O23463	0.0	CMTA5_ARATH; Calmodulin-binding transcription activator 5
TrEMBL	D7SY49	0.0	D7SY49_VITVI; Uncharacterized protein
STRING	VIT_05s0077g01240.t01	0.0	(Vitis vinifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G16150.1	0.0	calmodulin binding;transcription regulators

Link Out ? help Back to Top
Phytozome	Kalax.0391s0012.2.p

Publications ? help Back to Top
Ye J, et al. Arabidopsis formin3 directs the formation of actin cables and polarized growth in pollen tubes. Plant Cell, 2009. 21(12): p. 3868-84 [PMID:20023198] Kidokoro S, et al. Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature. Plant Cell, 2017. 29(4): p. 760-774 [PMID:28351986] Lan Y,Liu X,Fu Y,Huang S Arabidopsis class I formins control membrane-originated actin polymerization at pollen tube tips. PLoS Genet., 2018. 14(11): p. e1007789 [PMID:30418966]