PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.0391s0012.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

CAMTA

Protein Properties

Length: 919aa MW: 103827 Da PI: 6.94

Description

CAMTA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0391s0012.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CG-1	159	9.5e-50	26	143	2	118
CG-1 2 lke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahsee 90 l+e k+rwl+++ei+a+L n++ +++++++ + pksg+++Ly+rk++r+fr+DG++wkkk dgkt++E+he+LKvg+ e +++yYah+++ Kalax.0391s0012.1.p 26 LEEaKSRWLRPNEIHALLCNYKYFNIHAKPLNLPKSGTVVLYDRKMLRNFRRDGHNWKKKNDGKTIKEAHEHLKVGNEERIHVYYAHGHD 115 55669*********************************************************************************** PP CG-1 91 nptfqrrcywlLeeelekivlvhylevk 118 n tf rrcywlL+++le+ivlvhy+e++ Kalax.0391s0012.1.p 116 NLTFVRRCYWLLDKSLEHIVLVHYRETQ 143 ***********************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51437	72.924	22	148	IPR005559	CG-1 DNA-binding domain
SMART	SM01076	3.0E-69	25	143	IPR005559	CG-1 DNA-binding domain
Pfam	PF03859	4.9E-44	28	141	IPR005559	CG-1 DNA-binding domain
SuperFamily	SSF81296	2.29E-14	369	456	IPR014756	Immunoglobulin E-set
SuperFamily	SSF48403	5.91E-16	550	672	IPR020683	Ankyrin repeat-containing domain
CDD	cd00204	2.03E-14	554	664	No hit	No description
Gene3D	G3DSA:1.25.40.20	1.2E-15	559	669	IPR020683	Ankyrin repeat-containing domain
PROSITE profile	PS50297	16.52	563	676	IPR020683	Ankyrin repeat-containing domain
PROSITE profile	PS50088	11.06	605	637	IPR002110	Ankyrin repeat
SMART	SM00248	4.2E-5	605	634	IPR002110	Ankyrin repeat
Pfam	PF00023	1.1E-4	605	636	IPR002110	Ankyrin repeat
SMART	SM00248	370	644	675	IPR002110	Ankyrin repeat
SuperFamily	SSF52540	2.31E-6	766	840	IPR027417	P-loop containing nucleoside triphosphate hydrolase
SMART	SM00015	50	768	790	IPR000048	IQ motif, EF-hand binding site
SMART	SM00015	5.3E-4	791	813	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	10.676	792	816	IPR000048	IQ motif, EF-hand binding site
Pfam	PF00612	8.1E-5	794	813	IPR000048	IQ motif, EF-hand binding site
SMART	SM00015	6.7	871	893	IPR000048	IQ motif, EF-hand binding site
SuperFamily	SSF52540	2.31E-6	871	899	IPR027417	P-loop containing nucleoside triphosphate hydrolase
Pfam	PF00612	0.12	873	893	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	7.895	873	901	IPR000048	IQ motif, EF-hand binding site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 919 aa Download sequence Send to blast
MDAVLLAGSE IHGFHTMADL DVANMLEEAK SRWLRPNEIH ALLCNYKYFN IHAKPLNLPK 60 SGTVVLYDRK MLRNFRRDGH NWKKKNDGKT IKEAHEHLKV GNEERIHVYY AHGHDNLTFV 120 RRCYWLLDKS LEHIVLVHYR ETQELQGAPD TPVNSNSSSG NSDISVHQLL SDGTDSGHVE 180 SHYTGQNLYS ELGEIITEHI HEKTLHEINT LEWDELLVTN DPANIIAPKE GTHTSSHSIT 240 SDDNQEGFLL LNNISSEINP YLGYGSHNPG RGGANVKVLD EASFLSISGQ LNTHLSGKNY 300 VPVNSSSLIP KESLQNQDSF GRWMNDIIVD SPRSDENSML EQSLCPSHAP SGSFALRQSQ 360 SSFPDQIFTI TDISPGWAFS TENTKILLTG FFHKEYAHLA ISDITCVCGD ASVSVEVLQV 420 GVFRCFISPH KPGFVNIYLS LDGSKPISQV LTFEYRSSLS PTTLVSSEDT NKWMELRMKT 480 RLTHLLYLKS KSLDILSSKL SQNSVKEAKK FALKTSHIAN RWAYLIESLE DQKMSFHEAQ 540 DDLLELSLRN RLREWLLESI IQGSKIAYLD DEGLGVIHMC AILEYTWAVY LYSKSGLSLD 600 FRDKHGWTAL HWAAFYGREK MTAALLSAGA KPNLVTDPTP EHPGGCTAAD LASKQGYEGV 660 AAYLAEKGLV EHFNDMSIAG NVSGSLQTYT PDPTEISTLN EEEQYLKESL AAYRTAADAA 720 ARIQTAMREH ALKVKAKAVE VATPEAEARA IVAAMKIQHA FRNFETRKKI VAAGRIQQRF 780 RTWKIRKDFL QKRHKAIKIQ AVFRGYQVRR QYRKILWSVG VLEKAILRWR LKRKGFRGLQ 840 LDPDEALTKD GQEPNGEEDF FEAGRKQAEE RVERSVIKVQ AMFRSKQAQQ EYQRMKLAHT 900 QAKLEYEEFV EPEMDTDS*

Sequence ? help Back to Top

Protein Sequence Length: 919 aa Download sequence Send to blast

MDAVLLAGSE IHGFHTMADL DVANMLEEAK SRWLRPNEIH ALLCNYKYFN IHAKPLNLPK  60
SGTVVLYDRK MLRNFRRDGH NWKKKNDGKT IKEAHEHLKV GNEERIHVYY AHGHDNLTFV  120
RRCYWLLDKS LEHIVLVHYR ETQELQGAPD TPVNSNSSSG NSDISVHQLL SDGTDSGHVE  180
SHYTGQNLYS ELGEIITEHI HEKTLHEINT LEWDELLVTN DPANIIAPKE GTHTSSHSIT  240
SDDNQEGFLL LNNISSEINP YLGYGSHNPG RGGANVKVLD EASFLSISGQ LNTHLSGKNY  300
VPVNSSSLIP KESLQNQDSF GRWMNDIIVD SPRSDENSML EQSLCPSHAP SGSFALRQSQ  360
SSFPDQIFTI TDISPGWAFS TENTKILLTG FFHKEYAHLA ISDITCVCGD ASVSVEVLQV  420
GVFRCFISPH KPGFVNIYLS LDGSKPISQV LTFEYRSSLS PTTLVSSEDT NKWMELRMKT  480
RLTHLLYLKS KSLDILSSKL SQNSVKEAKK FALKTSHIAN RWAYLIESLE DQKMSFHEAQ  540
DDLLELSLRN RLREWLLESI IQGSKIAYLD DEGLGVIHMC AILEYTWAVY LYSKSGLSLD  600
FRDKHGWTAL HWAAFYGREK MTAALLSAGA KPNLVTDPTP EHPGGCTAAD LASKQGYEGV  660
AAYLAEKGLV EHFNDMSIAG NVSGSLQTYT PDPTEISTLN EEEQYLKESL AAYRTAADAA  720
ARIQTAMREH ALKVKAKAVE VATPEAEARA IVAAMKIQHA FRNFETRKKI VAAGRIQQRF  780
RTWKIRKDFL QKRHKAIKIQ AVFRGYQVRR QYRKILWSVG VLEKAILRWR LKRKGFRGLQ  840
LDPDEALTKD GQEPNGEEDF FEAGRKQAEE RVERSVIKVQ AMFRSKQAQQ EYQRMKLAHT  900
QAKLEYEEFV EPEMDTDS*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator (PubMed:14581622). Binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved in response to cold. Contributes together with CAMTA3 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:28351986). {ECO:0000250\|UniProtKB:Q8GSA7, ECO:0000269\|PubMed:14581622, ECO:0000269\|PubMed:28351986, ECO:0000305\|PubMed:11925432}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By heat shock, UVB, wounding, abscisic acid, H(2)O(2) and salicylic acid. {ECO:0000269\|PubMed:12218065}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028075463.1	0.0	calmodulin-binding transcription activator 5-like isoform X2
Swissprot	O23463	0.0	CMTA5_ARATH; Calmodulin-binding transcription activator 5
TrEMBL	D7SY49	0.0	D7SY49_VITVI; Uncharacterized protein
STRING	VIT_05s0077g01240.t01	0.0	(Vitis vinifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G16150.1	0.0	calmodulin binding;transcription regulators

Link Out ? help Back to Top
Phytozome	Kalax.0391s0012.1.p

Publications ? help Back to Top
Ye J, et al. Arabidopsis formin3 directs the formation of actin cables and polarized growth in pollen tubes. Plant Cell, 2009. 21(12): p. 3868-84 [PMID:20023198] Kidokoro S, et al. Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature. Plant Cell, 2017. 29(4): p. 760-774 [PMID:28351986] Lan Y,Liu X,Fu Y,Huang S Arabidopsis class I formins control membrane-originated actin polymerization at pollen tube tips. PLoS Genet., 2018. 14(11): p. e1007789 [PMID:30418966]