PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kalax.0388s0045.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | G2-like | ||||||||
Protein Properties | Length: 200aa MW: 22500.3 Da PI: 7.8206 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 101.1 | 7e-32 | 23 | 76 | 2 | 55 |
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prlrWtpeLH++Fv+a+++LGG+ekAtPk +l++m+v gLt++hvkSHLQ+YR+ Kalax.0388s0045.2.p 23 PRLRWTPELHSCFVQAIDKLGGQEKATPKLLLQVMDVRGLTISHVKSHLQMYRS 76 8****************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 7.6E-30 | 19 | 77 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 11.534 | 19 | 79 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.58E-15 | 21 | 78 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 3.0E-24 | 23 | 77 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 1.5E-7 | 24 | 75 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 200 aa Download sequence Send to blast |
MVSCGRGGGA GGGVRQYVRS KVPRLRWTPE LHSCFVQAID KLGGQEKATP KLLLQVMDVR 60 GLTISHVKSH LQMYRSIKSD LSRQVNLNSS DTSKQSFEDH DGDGDADEEQ DDDHNKMTLH 120 HHPSKPTSES DSHFVYNNSV DCINPPKRSV CSQTLTYIRQ SNKSNGEASC NYSLPLYCLF 180 TMCFAILPKY IIYFWSQYF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 4e-21 | 24 | 78 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 4e-21 | 24 | 78 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_A | 4e-21 | 24 | 78 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 4e-21 | 24 | 78 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 4e-21 | 24 | 78 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 4e-21 | 24 | 78 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 4e-21 | 24 | 78 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 4e-21 | 24 | 78 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 4e-21 | 24 | 78 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 4e-21 | 24 | 78 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 4e-21 | 24 | 78 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 4e-21 | 24 | 78 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028080007.1 | 2e-50 | putative Myb family transcription factor At1g14600 isoform X2 | ||||
Refseq | XP_028117629.1 | 6e-50 | uncharacterized protein LOC114315240 | ||||
TrEMBL | A0A1R3HQS3 | 5e-48 | A0A1R3HQS3_9ROSI; Uncharacterized protein | ||||
TrEMBL | A0A438CWL0 | 7e-48 | A0A438CWL0_VITVI; Putative Myb family transcription factor | ||||
TrEMBL | D7SMG8 | 7e-48 | D7SMG8_VITVI; Uncharacterized protein | ||||
STRING | VIT_01s0137g00050.t01 | 1e-48 | (Vitis vinifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G14600.1 | 4e-31 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | Kalax.0388s0045.2.p |