PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0388s0038.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family BBR-BPC
Protein Properties Length: 294aa    MW: 32184.3 Da    PI: 10.0712
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0388s0038.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind265.13.9e-81137293142301
            GAGA_bind 142 eeakekkkkkkrqrakkpkekkakkkkkksekskkkvkkesaderskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWq 231
                           + ke  +++k +  ++ k +k+kk++k +     + ++ ++ +r+k++kk +d+v+ng+++D+s++P+PvCsCtGa++qCY+WG+GGWq
  Kalax.0388s0038.1.p 137 VVPKEPVRTQKAKVDEVVKMPKMKKPRKDP---SLTLENGGSGKRVKQPKKIVDVVINGITMDISRIPIPVCSCTGAPQQCYRWGSGGWQ 223
                          333444444445555555666666666644...444455555579********************************************* PP

            GAGA_bind 232 SaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301
                          SaCCtt +S +PLP+stkrrgaRiagrKmS gafkk+LekLa+eGyd+s+++DL++hWAkHGtnkfvtir
  Kalax.0388s0038.1.p 224 SACCTTMLSEHPLPMSTKRRGARIAGRKMSLGAFKKVLEKLASEGYDFSKAIDLRTHWAKHGTNKFVTIR 293
                          *********************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012266.1E-1061293IPR010409GAGA-binding transcriptional activator
PfamPF062178.4E-8379293IPR010409GAGA-binding transcriptional activator
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    Send to blast
MGDDGLNLPN WVNFGSSLKG QSDPQLGWLG VPEAKSFLPV GEPGFALNAN ASCYAQPFFN  60
DQLARQREYG VQRMPPLVTA YVKESWAYPQ PAQRFLNILS GANTAYGVVP EFAPGAHAMH  120
MVQPVKAECL GLLDETVVPK EPVRTQKAKV DEVVKMPKMK KPRKDPSLTL ENGGSGKRVK  180
QPKKIVDVVI NGITMDISRI PIPVCSCTGA PQQCYRWGSG GWQSACCTTM LSEHPLPMST  240
KRRGARIAGR KMSLGAFKKV LEKLASEGYD FSKAIDLRTH WAKHGTNKFV TIR*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015867585.11e-91protein BASIC PENTACYSTEINE2-like
TrEMBLA0A2N9F2K91e-85A0A2N9F2K9_FAGSY; Uncharacterized protein
STRINGXP_008389141.11e-85(Malus domestica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14685.35e-69basic pentacysteine 2