PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0387s0007.3.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family TALE
Protein Properties Length: 802aa    MW: 87627.8 Da    PI: 7.3487
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0387s0007.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox29.41.4e-095996361954
                          HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
             Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                          Fe   ++yp+ +++  LA+++gLt +qV++WF N R +
  Kalax.0387s0007.3.p 599 FEHflHPYPTDTDKHMLATQTGLTRSQVSNWFINARVR 636
                          554459******************************88 PP
2BELL971.6e-31455525272
                 BELL   2 rqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                          r + q kkakLl++leeV +rYk y++q+q+v+s+Fe vagl +a+pY+s Al+ iSrhF  Lk+ai++q+
  Kalax.0387s0007.3.p 455 RPNYQLKKAKLLHMLEEVSRRYKLYHQQMQMVVSAFESVAGLTAAAPYISSALNSISRHFTHLKNAISDQL 525
                          56789***************************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005742.9E-40361523IPR006563POX domain
PfamPF075264.1E-37366522IPR006563POX domain
PROSITE profilePS5007111.969577640IPR001356Homeobox domain
CDDcd000869.35E-13580641No hitNo description
SMARTSM003891.6E-9580644IPR001356Homeobox domain
SuperFamilySSF466896.84E-17582646IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.4E-28583644IPR009057Homeodomain-like
PfamPF059204.4E-18597636IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 802 aa     Download sequence    Send to blast
MDSTMNNFIS DQLHVAQQSR REKLRVQHCS PSRSGHRVDD YTSGMEVVNH VFDPTPIQVG  60
EDNVRNAGDL VCHHPTRISS ELLLDFSGNI CHNARLSGAE EQASSFAGNS SGNPVSSNAD  120
GSLKPRRENY LEHCGVWKSV GPNSNSGNWN MDYLGRYRKN TSVGLASDLS ALGMRAKHNT  180
TTGHRQNQMN FDPQLSYQSA LSDEVTTAVV GLQPNNGVRG STAFVSWGSY GGDHEHVRAV  240
PHVYHQLDGD RLLGGSTWNG EMSFPHSRID PMVVDSHSQG LSLSLCSNPA ASMINGSQFG  300
DAHIIPQSIP TVANISCEDS KPLSPSNLVR PASVGQGSSL QEPVGASANY HRQTGPLGPF  360
TGYAAILKSS RFLKPAQQLL DEYCGVIGKL ASGSTGVASD RNTNQAGDLA TAVNSIESEV  420
GTSGDILGVS TSRHLDSNEI IKGPTSSPGP GEAQRPNYQL KKAKLLHMLE EVSRRYKLYH  480
QQMQMVVSAF ESVAGLTAAA PYISSALNSI SRHFTHLKNA ISDQLRHIKT FLGEDFALPG  540
IIRIKEDLNA KRLKYTDHGF QRLKSGGSNM GLLEPQQHIW RPQRGLPERA VSVLRAWLFE  600
HFLHPYPTDT DKHMLATQTG LTRSQVSNWF INARVRLWKP MVEEIHMLET KGLAEKDSHT  660
VADDNVSTNG ADPHLKADHS LSKMVGKTSV AVNLECSKMG SLSEMGDYQA AKQWNQENQS  720
RVVNGDMTSM GEGMMSISGY HQTGLEMGGM GSVSLTLGLR QSADQMYRLE DGQRQPTTFF  780
QQQRDRMRQH LGGHTVHEYA G*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4xrs_A8e-17586643158Homeobox protein Meis1
4xrs_B8e-17586643158Homeobox protein Meis1
5bng_A1e-16586644159Homeobox protein Meis2
5bng_B1e-16586644159Homeobox protein Meis2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27990.13e-83BEL1-like homeodomain 8