PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Kalax.0384s0025.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
|
||||||||
Family | E2F/DP | ||||||||
Protein Properties | Length: 480aa MW: 53019.2 Da PI: 5.0077 | ||||||||
Description | E2F/DP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | E2F_TDP | 86.1 | 2.6e-27 | 142 | 207 | 1 | 71 |
E2F_TDP 1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71 r+++sL+llt+kf++l++++e+gi++ln++a++L +v ++RRiYDi+NVLe+++liekk kn+irwkg Kalax.0384s0025.1.p 142 RYDSSLGLLTKKFINLIKHAEDGILDLNKAAETL---EV--QKRRIYDITNVLEGIGLIEKKLKNRIRWKG 207 6899******************************...99..****************************98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.10 | 3.3E-29 | 139 | 209 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM01372 | 2.0E-34 | 142 | 207 | IPR003316 | E2F/DP family, winged-helix DNA-binding domain |
SuperFamily | SSF46785 | 5.17E-17 | 142 | 205 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF02319 | 2.4E-24 | 144 | 207 | IPR003316 | E2F/DP family, winged-helix DNA-binding domain |
SuperFamily | SSF144074 | 2.54E-33 | 222 | 324 | No hit | No description |
CDD | cd14660 | 1.49E-46 | 222 | 324 | No hit | No description |
Pfam | PF16421 | 1.4E-33 | 223 | 322 | IPR032198 | E2F transcription factor, CC-MB domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0008284 | Biological Process | positive regulation of cell proliferation | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0010090 | Biological Process | trichome morphogenesis | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0051302 | Biological Process | regulation of cell division | ||||
GO:0051446 | Biological Process | positive regulation of meiotic cell cycle | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005667 | Cellular Component | transcription factor complex | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 480 aa Download sequence Send to blast |
MSGPRAPNRS APAPPQPQIS QPTKRHLPFT SIKPPFPAPA AADYHRFDAR HLGAQEADAI 60 VVRSPQLKRK NIAEDNEVAS SNWTNSTVYT EADKSPLKTP MSAKGGRVYN KSKGSKGNKA 120 ATQTPMLTAG SPSALTPAGN CRYDSSLGLL TKKFINLIKH AEDGILDLNK AAETLEVQKR 180 RIYDITNVLE GIGLIEKKLK NRIRWKGLDV SQPGGVETDV FSLQTDVENL NLEEQKLDDE 240 IREMQERLRY LSEDENNQKW LFVTEDDIKS LPCFQNETLI AIKAPHGTTL EVPDPDEAAD 300 YPQRRYRIVL RSTMGPIDVY LVSQFEEKFE DMNGAEQSVN CPVASTSRSV ENSGTHATNK 360 ESMGNDITGQ AQDARRLPSD RQMNDNGSDD FVSGIMKIVP DVNTDTDYWF LSDAELSVTE 420 LWHSETGIGN HLEDMHHANY EIGDTSIPQP QTPPSGVTDI PPPSVNSTPR LVCSPKTIE* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1cf7_A | 3e-24 | 137 | 208 | 2 | 74 | PROTEIN (TRANSCRIPTION FACTOR E2F-4) |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription activator that binds DNA cooperatively with DP proteins through the E2 recognition site, 5'-TTTC[CG]CGC-3' found in the promoter region of a number of genes whose products are involved in cell cycle regulation or in DNA replication. The binding of retinoblastoma-related proteins represses transactivation. Regulates gene expression both positively and negatively. Activates the expression of E2FB. Involved in the control of cell-cycle progression from G1 to S phase. Stimulates cell proliferation and delays differentiation. {ECO:0000269|PubMed:11669580, ECO:0000269|PubMed:11786543, ECO:0000269|PubMed:11862494, ECO:0000269|PubMed:11889041, ECO:0000269|PubMed:11891240, ECO:0000269|PubMed:12913157, ECO:0000269|PubMed:15377755, ECO:0000269|PubMed:16514015, ECO:0000269|PubMed:19662336}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010654143.1 | 0.0 | PREDICTED: transcription factor E2FA isoform X2 | ||||
Swissprot | Q9FNY0 | 1e-153 | E2FA_ARATH; Transcription factor E2FA | ||||
TrEMBL | A0A438JAG6 | 0.0 | A0A438JAG6_VITVI; Transcription factor E2FA | ||||
TrEMBL | D7TH52 | 0.0 | D7TH52_VITVI; Uncharacterized protein | ||||
STRING | VIT_08s0007g02510.t01 | 0.0 | (Vitis vinifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G36010.1 | 1e-157 | E2F transcription factor 3 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Kalax.0384s0025.1.p |
Publications ? help Back to Top | |||
---|---|---|---|
|