PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0384s0007.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family AP2
Protein Properties Length: 409aa    MW: 45978.9 Da    PI: 9.67
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0384s0007.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP237.65.3e-1274130155
                  AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng.kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                          s+++GV++++++gr++A+++d  ++n  +r k  + g ++ +e Aa+a++ a+ k++g
  Kalax.0384s0007.1.p  74 SKFRGVSRHRWTGRFEAHLWDkGTWNPtQRkKGKQ-GAYDDEESAARAYDLAAIKYWG 130
                          79*******************77777786635555.99***9**************98 PP
2AP250.55.2e-16173224155
                  AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                          s+y+GV +++ +grW+A+I   +   g +k+ +lg++ t eeAa a++ a+ +++g
  Kalax.0384s0007.1.p 173 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYSTQEEAAHAYDIAAIEYRG 224
                          89****99**********99966...3.6*************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.9E-874130IPR001471AP2/ERF domain
CDDcd000186.73E-1874140No hitNo description
SuperFamilySSF541712.88E-1474140IPR016177DNA-binding domain
SMARTSM003801.4E-1875144IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.0E-1275139IPR001471AP2/ERF domain
PROSITE profilePS5103217.95275138IPR001471AP2/ERF domain
PRINTSPR003672.4E-57687IPR001471AP2/ERF domain
CDDcd000181.61E-24173234No hitNo description
PfamPF008472.0E-11173224IPR001471AP2/ERF domain
SuperFamilySSF541711.44E-17173234IPR016177DNA-binding domain
PROSITE profilePS5103218.716174232IPR001471AP2/ERF domain
SMARTSM003805.1E-26174238IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.9E-18174233IPR001471AP2/ERF domain
PRINTSPR003672.4E-5214234IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 409 aa     Download sequence    Send to blast
MDTTTLKSEG SSVGHSTSMI REVDNAIVTN KSTKRRRRDH RVPAIVLPSS SNSEGNLQLL  60
HHVGQSPTAA KRSSKFRGVS RHRWTGRFEA HLWDKGTWNP TQRKKGKQGA YDDEESAARA  120
YDLAAIKYWG PSTFTNFPAS DYEKEIELMK SITKEEYLAT LRRRSSGFSR GVSKYRGVAR  180
HHHNGRWEAR IGRVFGNKYL YLGTYSTQEE AAHAYDIAAI EYRGVNAVTN FDLSTYIRWL  240
RPGGPAPTDP QDPILNTMEN KPPQLLFNQF RTQQADMSQL NSLNYKPDDF TSPKRQDFSQ  300
TKFPSSSNSR INPSSPTALG LLLRSSVFRN LVQQNSTASE ECPSHEALNS NTQQSNQMNE  360
DDELGRILFQ EVGTTNPFTF SSAETTLPDM TSPNSHSTPL YNPETQSL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
199107PTQRKKGKQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022775800.11e-148AP2-like ethylene-responsive transcription factor At1g16060
TrEMBLA0A2R6RFB41e-150A0A2R6RFB4_ACTCH; Ethylene-responsive transcription factor
STRINGVIT_01s0026g01690.t011e-144(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54320.31e-82AP2 family protein