PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0382s0034.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family GRAS
Protein Properties Length: 699aa    MW: 77740.5 Da    PI: 6.1901
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0382s0034.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS399.14.6e-1223076832374
                 GRAS   2 velLlecAeavssgdlelaqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPi 90 
                          v  L++c+ea+ s++  ++++++a+l +lasp+g +p+ Rl+ayfte+La r +r +++l++  +p++ +    +e+ ++++l++++sPi
  Kalax.0382s0034.1.p 307 VGDLIDCVEAIGSKNILAINHFIAKLGDLASPRGrTPIVRLVAYFTEGLAIRTSRIWPNLFHLATPRDLD-LADDEHGTSFRLLNQISPI 395
                          5689******************************99*************************999999987.6788999999********* PP

                 GRAS  91 lkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnv 180
                          +kf h+  N+ +l+a+eg+++vHiiDfdi+qGlQWp+++q+LasR+++p ++RiTgvg+    sk+el+etg+rLa fA ++++pfef++
  Kalax.0382s0034.1.p 396 PKFIHFSSNEILLRAFEGKQKVHIIDFDIKQGLQWPSFFQSLASRSRPPIHVRITGVGE----SKHELNETGDRLAGFAGAMNLPFEFHP 481
                          ***********************************************************....9************************** PP

                 GRAS 181 lvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfds 270
                           v++rled++l++L+vk+gE++aVn+++qlh++l +s   +   +++L l++s++P+vvv++eqea++n +s+ +r++++l+yysa+fds
  Kalax.0382s0034.1.p 482 -VVDRLEDVRLWMLHVKEGESVAVNCMFQLHKTLYDSSGGAL--RDLLGLIRSTNPTVVVMAEQEASTNFQSLDTRVCNSLKYYSAIFDS 568
                          .7*******************************966655444..89******************************************** PP

                 GRAS 271 leaklpres.eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveee..... 354
                          l+ +lp+ +  +rik E++ +grei+n++aceg+er erhet+ kW++ +++ GF+++++se++  q+++ll++++++ ++v+ +     
  Kalax.0382s0034.1.p 569 LHCSLPSPNaPARIKTEEM-FGREIRNIIACEGSERYERHETFTKWKKLMSDGGFTSMRISEREILQIQMLLKMYSFHRFSVKTQgdeee 657
                          ******99989*******9.********************************************************888****5445556 PP

                 GRAS 355 ......sgslvlgWkdrpLvsvSaWr 374
                                  +l+l W+d+pL++vSaW+
  Kalax.0382s0034.1.p 658 egatatATALTLSWEDEPLYTVSAWT 683
                          78887678889**************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098558.16280652IPR005202Transcription factor GRAS
PfamPF035141.6E-119307683IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 699 aa     Download sequence    Send to blast
MLAGCSSSTL LSPRHRLRIE ASKQFQACHF PLTNSMSTQR LDMQCSFPRR EAAISQPIRP  60
VGISVDQKPI ESRAGSCSLK QQNIHLPPLA TRPRLSLRGR RETEGGIWAE GNNLKRFAER  120
SPVDRSKKVK RKRGSSSKDV EQSEGAVEGD DDDDDASGLR LGQLDGRSFW FQSGFEVSSY  180
LPGLSQPEAP FSLTVSQDED RVCFVPSEVI SPPPLPLTNN PWIDFGVSKI THLGDKNVET  240
SHRQPAVREP SESRTSYESS LSLRLNENPP PVHDSGNGSG NPHPLEGAPA QVVDESDEEE  300
QLGFELVGDL IDCVEAIGSK NILAINHFIA KLGDLASPRG RTPIVRLVAY FTEGLAIRTS  360
RIWPNLFHLA TPRDLDLADD EHGTSFRLLN QISPIPKFIH FSSNEILLRA FEGKQKVHII  420
DFDIKQGLQW PSFFQSLASR SRPPIHVRIT GVGESKHELN ETGDRLAGFA GAMNLPFEFH  480
PVVDRLEDVR LWMLHVKEGE SVAVNCMFQL HKTLYDSSGG ALRDLLGLIR STNPTVVVMA  540
EQEASTNFQS LDTRVCNSLK YYSAIFDSLH CSLPSPNAPA RIKTEEMFGR EIRNIIACEG  600
SERYERHETF TKWKKLMSDG GFTSMRISER EILQIQMLLK MYSFHRFSVK TQGDEEEEGA  660
TATATALTLS WEDEPLYTVS AWTPTDAPGA SSSFSQRG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A4e-5931368426380Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017972132.10.0PREDICTED: scarecrow-like protein 28
SwissprotQ9CAN30.0SCL28_ARATH; Scarecrow-like protein 28
TrEMBLA0A061G6280.0A0A061G628_THECC; GRAS family transcription factor
STRINGEOY246320.0(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G63100.10.0GRAS family protein