PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kalax.0381s0031.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | SBP | ||||||||
Protein Properties | Length: 218aa MW: 24124.2 Da PI: 10.1592 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 132 | 2e-41 | 67 | 142 | 1 | 76 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkk 76 +Cqv+gC++dl+++k y++rhkvC +hsk++vv+v g+++rfCqqCsrfh+l efD+ekrsCrrrLa+hnerrrk+ Kalax.0381s0031.1.p 67 TCQVHGCNVDLTHVKAYYSRHKVCIMHSKSAVVTVGGVQKRFCQQCSRFHQLPEFDQEKRSCRRRLAGHNERRRKP 142 6*************************************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 1.3E-31 | 63 | 129 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 31.026 | 65 | 142 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 2.88E-39 | 66 | 144 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 3.3E-31 | 68 | 141 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 218 aa Download sequence Send to blast |
MAMSSSSITD SPNSSESLNG LTIGHKIYFE DVGVAAMPKS ANASSFPAAS PSKKMKPATS 60 RLQHPPTCQV HGCNVDLTHV KAYYSRHKVC IMHSKSAVVT VGGVQKRFCQ QCSRFHQLPE 120 FDQEKRSCRR RLAGHNERRR KPPPVSLLSS RYGTSSIFDT NNHGRGFLLD FSKNSGMPDM 180 DGHASSGDRR SILQTQVIGK FLMQPWTNSS ENPPSDHY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 6e-29 | 68 | 141 | 11 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Negatively regulated by microRNAs miR156 and miR157. {ECO:0000305|PubMed:12202040}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022935374.1 | 9e-71 | squamosa promoter-binding-like protein 17 isoform X1 | ||||
Swissprot | Q700W2 | 2e-43 | SPL9_ARATH; Squamosa promoter-binding-like protein 9 | ||||
TrEMBL | A0A0A0LBC1 | 2e-68 | A0A0A0LBC1_CUCSA; Uncharacterized protein | ||||
TrEMBL | A0A1S3B7Z5 | 2e-68 | A0A1S3B7Z5_CUCME; squamosa promoter-binding-like protein 9 isoform X1 | ||||
STRING | XP_008443072.1 | 3e-69 | (Cucumis melo) | ||||
STRING | XP_004136576.1 | 3e-69 | (Cucumis sativus) | ||||
STRING | XP_004161490.1 | 3e-69 | (Cucumis sativus) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G42200.1 | 6e-44 | squamosa promoter binding protein-like 9 |
Link Out ? help Back to Top | |
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Phytozome | Kalax.0381s0031.1.p |