PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0381s0030.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family G2-like
Protein Properties Length: 353aa    MW: 39189.7 Da    PI: 7.6802
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0381s0030.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like101.45.9e-32202256155
              G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                          k r+rWt++LH++Fve+v++LGGs+kAtPk+il+lm+ +gLt+ hvkSHLQkYR+
  Kalax.0381s0030.1.p 202 KMRIRWTQDLHDKFVECVNRLGGSDKATPKAILKLMDSDGLTIFHVKSHLQKYRT 256
                          67****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512949.041199259IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.0E-28200257IPR009057Homeodomain-like
SuperFamilySSF466891.59E-16200256IPR009057Homeodomain-like
TIGRFAMsTIGR015571.2E-23202257IPR006447Myb domain, plants
PfamPF002491.6E-8206255IPR001005SANT/Myb domain
PfamPF143798.6E-21283329IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 353 aa     Download sequence    Send to blast
MNSHDNNNGL ERIRLNHGLM SSGCSYDFVN SSYSSSVSQP DPRWHSMGGG GGGSEIMHSQ  60
TLITPTKLPS TILSRLGSPA SAFYATERCM AGFPQSRLDQ TPSFPLDSQF MNTLQSVVQP  120
HLLTANQYKS VFRNPAISGN STLAPTVSIP FRGIPDDKFC SSSSANTGLF SWSQTDGRNQ  180
YVETCSSHTT NRFSPGSTLS SKMRIRWTQD LHDKFVECVN RLGGSDKATP KAILKLMDSD  240
GLTIFHVKSH LQKYRTAKYL PESTEGKDTR SESVHLDMKT GLQIKEALQM QLDVQKTLHE  300
QLEIQRNLQL RIEEQGKQLR MMFDQHHKTN TSSSGHDPTE DNHPCEDTSV QS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A3e-23202259259Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B3e-23202259259Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A3e-23202259158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B3e-23202259158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C3e-23202259158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D3e-23202259158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A3e-23202259259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C3e-23202259259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D3e-23202259259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F3e-23202259259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H3e-23202259259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J3e-23202259259Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006587215.15e-86myb family transcription factor PHL5 isoform X1
RefseqXP_028180223.15e-86myb family transcription factor PHL5-like isoform X1
TrEMBLA0A0B2PVD61e-84A0A0B2PVD6_GLYSO; Myb family transcription factor APL
TrEMBLK7LD831e-84K7LD83_SOYBN; Uncharacterized protein
STRINGGLYMA09G17404.12e-85(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06800.15e-67G2-like family protein