PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kalax.0380s0038.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | G2-like | ||||||||
Protein Properties | Length: 472aa MW: 51993 Da PI: 6.8354 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 95.4 | 4.3e-30 | 245 | 299 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kpr+rW pe+He+Fveav++L G+ekAtPk +l+lm++k Lt++hvkSHLQkYRl Kalax.0380s0038.2.p 245 KPRMRWLPEIHECFVEAVNKLDGPEKATPKGVLKLMNMKNLTIYHVKSHLQKYRL 299 79****************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 2.33E-15 | 242 | 299 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.9E-28 | 244 | 300 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 2.4E-22 | 245 | 300 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 1.6E-5 | 247 | 298 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 2.8E-21 | 335 | 382 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 472 aa Download sequence Send to blast |
MSKKQSQPPK RVTLPVCSSP PHPKCAATEL QNVALFSTCS TFLSSPQTDH VDAHNLISKS 60 AIVPFKSYAH QSKTTHCPSS LFCTNLYQSS SSTSEAHRQL GNPPFLPNPP PSTHPLSHFH 120 SQTSPLHFSG ASSCSYHEQQ ANDDLMGDFT YMHGDSFDGS FHGLNSGNND IGISDQLDLH 180 FLSDELDIAM THSGDNPGID ELYEVPKESL KSSVELTCNS NCNSSALVGD ATSSEMSPGL 240 CTVHKPRMRW LPEIHECFVE AVNKLDGPEK ATPKGVLKLM NMKNLTIYHV KSHLQKYRLA 300 KYMQERKEDK NLSSNEAKKA TSSCNESDGR RKGSIQVTEA LRMQMEVQKQ LHEQLEVQRA 360 LQLRIEEHAR HLQKILEEQQ KAGNHFISLH SLSSLTSSST CTNTALEPTK PTSPVLSSHD 420 EATVSKTELS LASGHKEINS NDSEEPGRKR PRLETKFENT PCDGVPSGQN P* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 5e-24 | 245 | 302 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 5e-24 | 245 | 302 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 5e-24 | 245 | 302 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 5e-24 | 245 | 302 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 5e-24 | 245 | 302 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 5e-24 | 245 | 302 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 5e-24 | 245 | 302 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 5e-24 | 245 | 302 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00354 | DAP | Transfer from AT3G13040 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021819954.1 | 1e-139 | myb family transcription factor PHL6 | ||||
Refseq | XP_021819955.1 | 1e-139 | myb family transcription factor PHL6 | ||||
Refseq | XP_021819956.1 | 1e-139 | myb family transcription factor PHL6 | ||||
TrEMBL | A0A498HDN5 | 1e-134 | A0A498HDN5_MALDO; Uncharacterized protein | ||||
STRING | XP_009344989.1 | 1e-133 | (Pyrus x bretschneideri) | ||||
STRING | XP_008355262.1 | 1e-133 | (Malus domestica) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13040.2 | 5e-94 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | Kalax.0380s0038.2.p |