PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0380s0038.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family G2-like
Protein Properties Length: 472aa    MW: 51993 Da    PI: 6.8354
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0380s0038.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like95.44.3e-30245299155
              G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                          kpr+rW pe+He+Fveav++L G+ekAtPk +l+lm++k Lt++hvkSHLQkYRl
  Kalax.0380s0038.1.p 245 KPRMRWLPEIHECFVEAVNKLDGPEKATPKGVLKLMNMKNLTIYHVKSHLQKYRL 299
                          79****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.33E-15242299IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.9E-28244300IPR009057Homeodomain-like
TIGRFAMsTIGR015572.4E-22245300IPR006447Myb domain, plants
PfamPF002491.6E-5247298IPR001005SANT/Myb domain
PfamPF143792.8E-21335382IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 472 aa     Download sequence    Send to blast
MSKKQSQPPK RVTLPVCSSP PHPKCAATEL QNVALFSTCS TFLSSPQTDH VDAHNLISKS  60
AIVPFKSYAH QSKTTHCPSS LFCTNLYQSS SSTSEAHRQL GNPPFLPNPP PSTHPLSHFH  120
SQTSPLHFSG ASSCSYHEQQ ANDDLMGDFT YMHGDSFDGS FHGLNSGNND IGISDQLDLH  180
FLSDELDIAM THSGDNPGID ELYEVPKESL KSSVELTCNS NCNSSALVGD ATSSEMSPGL  240
CTVHKPRMRW LPEIHECFVE AVNKLDGPEK ATPKGVLKLM NMKNLTIYHV KSHLQKYRLA  300
KYMQERKEDK NLSSNEAKKA TSSCNESDGR RKGSIQVTEA LRMQMEVQKQ LHEQLEVQRA  360
LQLRIEEHAR HLQKILEEQQ KAGNHFISLH SLSSLTSSST CTNTALEPTK PTSPVLSSHD  420
EATVSKTELS LASGHKEINS NDSEEPGRKR PRLETKFENT PCDGVPSGQN P*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A5e-24245302259Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B5e-24245302259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A5e-24245302259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C5e-24245302259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D5e-24245302259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F5e-24245302259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H5e-24245302259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J5e-24245302259Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00354DAPTransfer from AT3G13040Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021819954.11e-139myb family transcription factor PHL6
RefseqXP_021819955.11e-139myb family transcription factor PHL6
RefseqXP_021819956.11e-139myb family transcription factor PHL6
TrEMBLA0A498HDN51e-134A0A498HDN5_MALDO; Uncharacterized protein
STRINGXP_009344989.11e-133(Pyrus x bretschneideri)
STRINGXP_008355262.11e-133(Malus domestica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13040.25e-94G2-like family protein