PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0380s0031.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family DBB
Protein Properties Length: 274aa    MW: 29443.4 Da    PI: 5.6173
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0380s0031.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box19.42.2e-06447542
             zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42
                          C+ +e+ e++  C  ++  lC  C  + H        H++vpl
  Kalax.0380s0031.1.p  4 QCNVCESAEAKVLCCADEAALCWACDHKVHAAnklagkHQRVPL 47
                         7*****************************66899999999986 PP
2zf-B_box27.85.2e-095494337
             zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......H 37
                         ++kC+ ++e    +fC +++ llC++C + +H +      H
  Kalax.0380s0031.1.p 54 MPKCDICQEAVGYFFCLEDRALLCRSCDVLIHTSnnmvslH 94
                         799*******9*********************765555555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.381147IPR000315B-box-type zinc finger
CDDcd000213.80E-7347No hitNo description
SMARTSM003361.0E-8447IPR000315B-box-type zinc finger
SuperFamilySSF578452.15E-54595No hitNo description
SMARTSM003362.1E-135299IPR000315B-box-type zinc finger
PROSITE profilePS501198.8735293IPR000315B-box-type zinc finger
PfamPF006431.4E-65486IPR000315B-box-type zinc finger
CDDcd000212.50E-85599No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009641Biological Processshade avoidance
GO:0009658Biological Processchloroplast organization
GO:0009718Biological Processanthocyanin-containing compound biosynthetic process
GO:0010099Biological Processregulation of photomorphogenesis
GO:0015995Biological Processchlorophyll biosynthetic process
GO:0016607Cellular Componentnuclear speck
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 274 aa     Download sequence    Send to blast
MKIQCNVCES AEAKVLCCAD EAALCWACDH KVHAANKLAG KHQRVPLSTT SSHMPKCDIC  60
QEAVGYFFCL EDRALLCRSC DVLIHTSNNM VSLHQRFLLT GVKVGLESAG VSQSSPAVKS  120
TSGQKTLQNE GHEAFKMKLP KPVPNSCSKV LATKVGGDAE TKLAEPPYSG GSSGGAISNW  180
MDDFFGLDDV DQNYAYMDEA SPKADSGKLG DSEKELEADR CLGKVSETAW MVPELSSPSR  240
ILGLQRNPID YVAFVPEMGY DPSGCRSTFQ GSF*
Functional Description ? help Back to Top
Source Description
UniProtActs as positive regulator of seedling photomorphogenesis and light-regulated inhibition of hypocotyl elongation, independently and in concert with HY5 and BBX21 (PubMed:18540109, PubMed:18796637, PubMed:18182030, PubMed:21427283). Acts as a positive regulator of de-etiolation and influences chloroplast biogenesis and function through regulation of genes encoding chloroplast proteins (PubMed:18182030). Acts downstream of COP1 and plays an important role in early and long-term adjustment of the shade avoidance syndrome (SAS) responses in natural environments (PubMed:21070414). Regulates the expression of genes responsive to light hormone signals which may contribute to optimal seedling development (PubMed:21427283). {ECO:0000269|PubMed:18182030, ECO:0000269|PubMed:18540109, ECO:0000269|PubMed:18796637, ECO:0000269|PubMed:21070414, ECO:0000269|PubMed:21427283}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By light. {ECO:0000269|PubMed:18182030}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016581093.11e-100PREDICTED: B-box zinc finger protein 22
SwissprotQ9SYM24e-78BBX22_ARATH; B-box zinc finger protein 22
TrEMBLA0A1U8HIT45e-99A0A1U8HIT4_CAPAN; B-box zinc finger protein 22
STRINGXP_009625544.14e-98(Nicotiana tomentosiformis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78600.12e-80light-regulated zinc finger protein 1