PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kalax.0377s0010.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | DBB | ||||||||
Protein Properties | Length: 193aa MW: 21423.9 Da PI: 6.9031 | ||||||||
Description | DBB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 20.7 | 8.9e-07 | 4 | 42 | 5 | 37 |
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......H 37 C+ + ++++ fC+ ++ lCe C H+ H Kalax.0377s0010.1.p 4 QCDVCAVEQATVFCTADEAALCEGCDRMVHHVnklaqkH 42 7*****999*****************9996323555555 PP | |||||||
2 | zf-B_box | 30.6 | 7e-10 | 54 | 95 | 2 | 37 |
zf-B_box 2 eerkCpeHeekelqlfCedCqqllCedClleeHkg......H 37 e++ C+ ++e ++ lfC++++ lC+ C l++H+ H Kalax.0377s0010.1.p 54 EAPLCDICQEARAYLFCKEDRAILCRGCDLSIHQAneltqnH 95 6799*****************************765555555 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50119 | 10.865 | 1 | 47 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 3.72E-4 | 3 | 47 | No hit | No description |
Pfam | PF00643 | 1.2E-5 | 4 | 43 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 5.2E-6 | 4 | 47 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 1.5E-15 | 53 | 100 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 10.808 | 53 | 100 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 3.8E-8 | 54 | 96 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 1.01E-8 | 56 | 88 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 193 aa Download sequence Send to blast |
MKIQCDVCAV EQATVFCTAD EAALCEGCDR MVHHVNKLAQ KHRRFSLLHP PGKEAPLCDI 60 CQEARAYLFC KEDRAILCRG CDLSIHQANE LTQNHNRYIL TGVKLSTNPS VYQFSSSPSS 120 SADREDLKHK AKSSKSAARS RATTNSDQVL QRSESSSMSN NSTGNISEYL ETLPGWHVED 180 YFDPSPNNYA FC* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that acts as positive regulator of seedling photomorphogenesis (PubMed:17965270). Acts downstream of COP1 and play an important role in early and long-term adjustment of the shade avoidance syndrome (SAS) responses in natural environments (PubMed:21070414). {ECO:0000269|PubMed:17965270, ECO:0000269|PubMed:21070414}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010109757.1 | 4e-71 | B-box zinc finger protein 20 isoform X1 | ||||
Refseq | XP_024030098.1 | 2e-71 | B-box zinc finger protein 20 isoform X2 | ||||
Swissprot | Q9LQZ7 | 9e-59 | BBX21_ARATH; B-box zinc finger protein 21 | ||||
TrEMBL | W9S3C1 | 8e-70 | W9S3C1_9ROSA; Uncharacterized protein | ||||
STRING | XP_010109757.1 | 1e-70 | (Morus notabilis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75540.1 | 1e-53 | salt tolerance homolog2 |
Link Out ? help Back to Top | |
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Phytozome | Kalax.0377s0010.1.p |