PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0375s0046.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family bHLH
Protein Properties Length: 272aa    MW: 30159.3 Da    PI: 7.0646
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0375s0046.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.77.3e-1267114355
                          HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          ++h+ +ErrRR+riN  +++Lr l+P       +K++Ka+ L ++++ +k+Lq
  Kalax.0375s0046.1.p  67 KNHSLAERRRRERINGHLATLRGLVPAH-----EKMDKATLLAEVINQVKDLQ 114
                          58*************************8.....8****************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.21864113IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.36E-1167115No hitNo description
PfamPF000101.6E-967114IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.37E-1467121IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.0E-1468121IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.7E-1270119IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd048734.01E-5152217No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 272 aa     Download sequence    Send to blast
MEQQLWDADS VYVKMFDPFE VEPGGAGDGK EEVADSEDED MAKMAEGSGK KMKKKGVMNE  60
KATVALKNHS LAERRRRERI NGHLATLRGL VPAHEKMDKA TLLAEVINQV KDLQEDARRV  120
SKGLLIPTDA DELTVEPLHD ESQSGVITFK ASLCCDFRPD LFSDLKQAIG SLKLKTLRSE  180
ISTLGERVKT LFILSSPINV NDGEAQKNLA NAILQALSSV LYKPSPLPEY SLRTTLSQKR  240
FKTSFEDYSP RSVLSHKRFR YPSLEASSSS T*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17277ERRRRE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40200.15e-35bHLH family protein