PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0375s0019.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family MIKC_MADS
Protein Properties Length: 263aa    MW: 30034.9 Da    PI: 9.8477
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0375s0019.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF99.71.1e-313585151
                         S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
               SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                         krien++nrqvtf+kRrng+lKKA+ELSvLCdaeva+i+fss+g+lyeys+
  Kalax.0375s0019.1.p 35 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYSN 85
                         79***********************************************95 PP
2K-box88.21.5e-291021993100
                K-box   3 kssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenk 92 
                          +s++ s++ea+++++ qe+akL+++i nLq+++R++lGe+L+  + ++L++ e++Le+s++kiR++Knell  ++e++qkke +l+++n+
  Kalax.0375s0019.1.p 102 SSNTGSVSEANTQYYLQEAAKLRQQIANLQNTNRNFLGESLSLNNTRDLKSQEKKLEESIRKIRARKNELLSLELENMQKKEIDLHNINQ 191
                          3445559*********************************************************************************** PP

                K-box  93 aLrkklee 100
                          +Lr+++ e
  Kalax.0375s0019.1.p 192 YLRARISE 199
                          ***99875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.8E-412786IPR002100Transcription factor, MADS-box
PROSITE profilePS5006633.6412787IPR002100Transcription factor, MADS-box
CDDcd002651.36E-4328104No hitNo description
SuperFamilySSF554555.62E-3328100IPR002100Transcription factor, MADS-box
PRINTSPR004047.4E-332949IPR002100Transcription factor, MADS-box
PROSITE patternPS0035002983IPR002100Transcription factor, MADS-box
PfamPF003191.0E-263683IPR002100Transcription factor, MADS-box
PRINTSPR004047.4E-334964IPR002100Transcription factor, MADS-box
PRINTSPR004047.4E-336485IPR002100Transcription factor, MADS-box
PfamPF014864.9E-21111197IPR002487Transcription factor, K-box
PROSITE profilePS5129713.997113203IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048366Biological Processleaf development
GO:0048440Biological Processcarpel development
GO:0048443Biological Processstamen development
GO:0048497Biological Processmaintenance of floral organ identity
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 263 aa     Download sequence    Send to blast
MEFKHIGESS SRRGEQLSDT ESPQRKIGRG KIEIKRIENT TNRQVTFCKR RNGLLKKAYE  60
LSVLCDAEVA LIVFSSRGRL YEYSNNSVKA TIEKYKKACS DSSNTGSVSE ANTQYYLQEA  120
AKLRQQIANL QNTNRNFLGE SLSLNNTRDL KSQEKKLEES IRKIRARKNE LLSLELENMQ  180
KKEIDLHNIN QYLRARISEN ERAQQQMSLM PPPPPPASGV GTSFEQLLPS TQFDSRSYFE  240
VNALQPNQVA YPRQDQMPLQ LV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P2e-202795169Myocyte-specific enhancer factor 2B
1tqe_Q2e-202795169Myocyte-specific enhancer factor 2B
1tqe_R2e-202795169Myocyte-specific enhancer factor 2B
1tqe_S2e-202795169Myocyte-specific enhancer factor 2B
6c9l_A2e-202795169Myocyte-specific enhancer factor 2B
6c9l_B2e-202795169Myocyte-specific enhancer factor 2B
6c9l_C2e-202795169Myocyte-specific enhancer factor 2B
6c9l_D2e-202795169Myocyte-specific enhancer factor 2B
6c9l_E2e-202795169Myocyte-specific enhancer factor 2B
6c9l_F2e-202795169Myocyte-specific enhancer factor 2B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in regulating genes that determines stamen and carpel development in wild-type flowers. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00609ChIP-seqTransfer from AT4G18960Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028062146.11e-121floral homeotic protein AGAMOUS-like
SwissprotQ408851e-120AG_PETHY; Floral homeotic protein AGAMOUS
TrEMBLA0A068CLH31e-120A0A068CLH3_CAMSI; AGAMOUS-like protein
STRINGPGSC0003DMT4000731341e-119(Solanum tuberosum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18960.18e-99MIKC_MADS family protein
Publications ? help Back to Top
  1. Immink RG, et al.
    Analysis of the petunia MADS-box transcription factor family.
    Mol. Genet. Genomics, 2003. 268(5): p. 598-606
    [PMID:12589434]