PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.0375s0008.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

WRKY

Protein Properties

Length: 365aa MW: 39877.6 Da PI: 7.7221

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0375s0008.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	105.9	2.1e-33	193	250	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +Dgy+WrKYGqK vk+s++prsYYrCt+++C+vkk+vers +dp+vv++tYe++Hnh+ Kalax.0375s0008.1.p 193 EDGYRWRKYGQKAVKNSPYPRSYYRCTTQKCNVKKRVERSFQDPSVVITTYESQHNHP 250 8********************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	4.2E-35	177	252	IPR003657	WRKY domain
SuperFamily	SSF118290	2.62E-29	184	252	IPR003657	WRKY domain
PROSITE profile	PS50811	32.42	187	252	IPR003657	WRKY domain
SMART	SM00774	2.3E-39	192	251	IPR003657	WRKY domain
Pfam	PF03106	6.1E-26	193	250	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 365 aa Download sequence Send to blast
MSDHQSTDFF NLFHDPFVTY QYNNLLGQAG TAPTSAGSSL YDNSSYNSGI TGMSFSESLD 60 GSVDYNALAR AFGLSSSEDL LLSAVNEGLS YGKVQRDQMV QGVGDDGQRG GRGRSTGGGD 120 QFANSSISSS SGEASGGEED CSKKENKVAK GSHAGEDGDG SKKQNKQNNK KGEKKQREPR 180 FAFMTKSEVD HLEDGYRWRK YGQKAVKNSP YPRSYYRCTT QKCNVKKRVE RSFQDPSVVI 240 TTYESQHNHP IPTTLRGSYN ASGLMFSSTS SLSPASFNLV GGGGQGAGFT NPHDVFLRMP 300 HQYDNNTLIH GSTIMEYNNG VPPSLTLMQL QQRRHQRPFQ SDYGLLQDMV NPSASFGDHK 360 LEQP*

Sequence ? help Back to Top

Protein Sequence Length: 365 aa Download sequence Send to blast

MSDHQSTDFF NLFHDPFVTY QYNNLLGQAG TAPTSAGSSL YDNSSYNSGI TGMSFSESLD  60
GSVDYNALAR AFGLSSSEDL LLSAVNEGLS YGKVQRDQMV QGVGDDGQRG GRGRSTGGGD  120
QFANSSISSS SGEASGGEED CSKKENKVAK GSHAGEDGDG SKKQNKQNNK KGEKKQREPR  180
FAFMTKSEVD HLEDGYRWRK YGQKAVKNSP YPRSYYRCTT QKCNVKKRVE RSFQDPSVVI  240
TTYESQHNHP IPTTLRGSYN ASGLMFSSTS SLSPASFNLV GGGGQGAGFT NPHDVFLRMP  300
HQYDNNTLIH GSTIMEYNNG VPPSLTLMQL QQRRHQRPFQ SDYGLLQDMV NPSASFGDHK  360
LEQP*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	3e-28	183	252	8	77	Probable WRKY transcription factor 4
2lex_A	3e-28	183	252	8	77	Probable WRKY transcription factor 4
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012445471.1	6e-75	PREDICTED: probable WRKY transcription factor 71
Swissprot	Q93WV4	6e-56	WRK71_ARATH; WRKY transcription factor 71
TrEMBL	A0A0D2S1Y1	1e-73	A0A0D2S1Y1_GOSRA; Uncharacterized protein
STRING	Gorai.009G157300.1	2e-74	(Gossypium raimondii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G29860.1	8e-55	WRKY DNA-binding protein 71

Link Out ? help Back to Top
Phytozome	Kalax.0375s0008.1.p

Publications ? help Back to Top
Guo D, et al. The WRKY Transcription Factor WRKY71/EXB1 Controls Shoot Branching by Transcriptionally Regulating RAX Genes in Arabidopsis. Plant Cell, 2015. 27(11): p. 3112-27 [PMID:26578700] Yu Y, et al. WRKY71 accelerates flowering via the direct activation of FLOWERING LOCUS T and LEAFY in Arabidopsis thaliana. Plant J., 2016. 85(1): p. 96-106 [PMID:26643131] Guo D,Qin G EXB1/WRKY71 transcription factor regulates both shoot branching and responses to abiotic stresses. Plant Signal Behav, 2016. 11(3): p. e1150404 [PMID:26914912] Yu Y, et al. WRKY71 Acts Antagonistically Against Salt-Delayed Flowering in Arabidopsis thaliana. Plant Cell Physiol., 2018. 59(2): p. 414-422 [PMID:29272465]