PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.0365s0032.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

GATA

Protein Properties

Length: 264aa MW: 29082.7 Da PI: 7.4161

Description

GATA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0365s0032.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GATA	46.6	4.7e-15	202	238	1	35
GATA 1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 C++Cg + Tp++R gp g+k+LCnaCGly++ +g+ Kalax.0365s0032.1.p 202 CTHCGIGSnsTPMMRIGPAGPKSLCNACGLYWKNTGR 238 **865556*********************9986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51320	10.465	68	103	IPR010399	Tify domain
Pfam	PF06200	6.3E-5	71	93	IPR010399	Tify domain
PROSITE profile	PS51017	12.372	135	177	IPR010402	CCT domain
Pfam	PF06203	1.7E-14	135	177	IPR010402	CCT domain
SMART	SM00401	4.2E-10	196	249	IPR000679	Zinc finger, GATA-type
SuperFamily	SSF57716	2.33E-10	201	247	No hit	No description
CDD	cd00202	1.40E-12	202	247	No hit	No description
PROSITE profile	PS50114	9.302	202	252	IPR000679	Zinc finger, GATA-type
Pfam	PF00320	6.0E-13	202	238	IPR000679	Zinc finger, GATA-type
Gene3D	G3DSA:3.30.50.10	3.4E-14	202	243	IPR013088	Zinc finger, NHR/GATA-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0005515	Molecular Function	protein binding
GO:0008270	Molecular Function	zinc ion binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 264 aa Download sequence Send to blast
MMYGQFAKTD PVEEECGLEP LKDSDLDLDL DLELELAYEL NALDHDDGDK SGPSSGVTVA 60 EEITTPQSSE DSAQLFISYA GQAYVFDSVA SEQFKDALYV LGMRGAWVGD RDAGKSCQSR 120 MRKGELPGRC SQLQRLASLK RFRQKKMNRC FEKKIRYHVR QKVALRLPRS KGQFFSEKTV 180 DCGGNNTKDS GPSNSLHYLN GCTHCGIGSN STPMMRIGPA GPKSLCNACG LYWKNTGRLR 240 DLSSRSKASS HDLPEVGHFL HEG*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006580988.1	3e-55	uncharacterized protein LOC100784789 isoform X1
Refseq	XP_015935014.1	3e-55	GATA transcription factor 25
TrEMBL	I1K9S5	7e-54	I1K9S5_SOYBN; Uncharacterized protein
STRING	GLYMA06G10280.1	1e-54	(Glycine max)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G51600.2	3e-50	ZIM-LIKE 2

Link Out ? help Back to Top
Phytozome	Kalax.0365s0032.1.p