PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0364s0037.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family MYB
Protein Properties Length: 271aa    MW: 30068.4 Da    PI: 6.5077
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0364s0037.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.75.7e-181865148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         +g W++eEd+ l+d+v+ +G+g+W++++++ g++R++k+c++rw +yl
  Kalax.0364s0037.1.p 18 KGLWSAEEDQMLLDYVNTHGKGHWNRVSKKTGLKRSGKSCRLRWMNYL 65
                         678*******************************************97 PP
2Myb_DNA-binding58.81.3e-1871116148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                          r r+T++Ed+l+++++k+lG++ W++Ia +++ gRt++q+k++w+++l
  Kalax.0364s0037.1.p  71 RERFTEDEDDLIIRLHKLLGNR-WALIAGRVP-GRTDNQVKNYWNTHL 116
                          78********************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.561365IPR017930Myb domain
SuperFamilySSF466892.93E-3115112IPR009057Homeodomain-like
SMARTSM007172.2E-151767IPR001005SANT/Myb domain
PfamPF002491.6E-161865IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.0E-221972IPR009057Homeodomain-like
CDDcd001676.31E-132165No hitNo description
PROSITE profilePS5129427.58366120IPR017930Myb domain
SMARTSM007178.1E-1870118IPR001005SANT/Myb domain
PfamPF002494.9E-1771116IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.5E-2673120IPR009057Homeodomain-like
CDDcd001675.34E-1473116No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    Send to blast
MKDSKPQMNG SSEDRVRKGL WSAEEDQMLL DYVNTHGKGH WNRVSKKTGL KRSGKSCRLR  60
WMNYLSPSVK RERFTEDEDD LIIRLHKLLG NRWALIAGRV PGRTDNQVKN YWNTHLSKKL  120
IGKDTPNTQP AHSKPVIMHN CSELRSCCSG NNLSTAPADD QMISSDFSSN TTCGDVVTVP  180
IETANTEEED ETNIMKESVS GDVANRQIGA LQTSKADELR QIETVAADAG ADDDGDHGSC  240
CFMQYLDDYT LHFVLNNNKR NNAASATAGM *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-28181207108B-MYB
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G14750.12e-63myb domain protein 66