PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0362s0010.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family MIKC_MADS
Protein Properties Length: 264aa    MW: 29684.1 Da    PI: 10.0743
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0362s0010.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF97.46.1e-313282151
                         S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
               SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                         krien++nrqvtf+kRrng+lKKA+ELSvLC+aeva+i+fss+g+lyeys+
  Kalax.0362s0010.1.p 32 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCEAEVALIVFSSRGRLYEYSN 82
                         79***********************************************95 PP
2K-box105.46.9e-351021975100
                K-box   5 sgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaL 94 
                          ++ s++e++ + +qqe++kL+++i+++q+ +R++lGe+L++L+ k+L++Le++Leks++++R+kKnell+++ie +qkke  l+++n++L
  Kalax.0362s0010.1.p 102 NTASVAETNIQMYQQESRKLRQQINTIQKANRNILGESLGNLNPKDLKNLEKKLEKSISNVRAKKNELLYSEIEFMQKKEAYLHNNNQYL 191
                          445599************************************************************************************ PP

                K-box  95 rkklee 100
                          r+k+ e
  Kalax.0362s0010.1.p 192 RAKISE 197
                          ***976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004325.5E-402483IPR002100Transcription factor, MADS-box
PROSITE profilePS5006633.1792484IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.79E-322599IPR002100Transcription factor, MADS-box
CDDcd002654.69E-4225100No hitNo description
PRINTSPR004043.7E-322646IPR002100Transcription factor, MADS-box
PROSITE patternPS0035002680IPR002100Transcription factor, MADS-box
PfamPF003197.3E-263380IPR002100Transcription factor, MADS-box
PRINTSPR004043.7E-324661IPR002100Transcription factor, MADS-box
PRINTSPR004043.7E-326182IPR002100Transcription factor, MADS-box
PfamPF014861.2E-24109195IPR002487Transcription factor, K-box
PROSITE profilePS5129714.239111201IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 264 aa     Download sequence    Send to blast
MSFQNQQSSR EDADDSVSPT QPRLGRGKIE IKRIENTTNR QVTFCKRRNG LLKKAYELSV  60
LCEAEVALIV FSSRGRLYEY SNNNSVKSTI ERYKKAHSDS PNTASVAETN IQMYQQESRK  120
LRQQINTIQK ANRNILGESL GNLNPKDLKN LEKKLEKSIS NVRAKKNELL YSEIEFMQKK  180
EAYLHNNNQY LRAKISENAR AQQQMNSISG TGGGGGGSGY DHQVIPSGGG QQFDSRNFFE  240
VNNALQSSTS YSSRPDHIPL QLV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6bz1_A1e-1924109187MEF2 CHIMERA
6bz1_B1e-1924109187MEF2 CHIMERA
6bz1_C1e-1924109187MEF2 CHIMERA
6bz1_D1e-1924109187MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in regulating genes that determines stamen and carpel development in wild-type flowers. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006358067.11e-106PREDICTED: floral homeotic protein AGAMOUS isoform X2
SwissprotQ408721e-109AG_PANGI; Floral homeotic protein AGAMOUS
TrEMBLA5C1Q41e-107A5C1Q4_VITVI; Uncharacterized protein
STRINGPGSC0003DMT4000731341e-105(Solanum tuberosum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18960.12e-88MIKC_MADS family protein