PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.0361s0031.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

SRS

Protein Properties

Length: 333aa MW: 36043.1 Da PI: 7.9476

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0361s0031.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	195.3	2e-60	123	280	2	154
DUF702 2 rsgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrel.kskkqsalsstk 90 r g++sCqdCGnqakk+C+h+RCRtCC srgfdC+thvkstWvpaakrrerqq+++++++ ++ +a+a++ ++ +s ++ a s ++ Kalax.0361s0031.1.p 123 RRGSISCQDCGNQAKKECVHMRCRTCCMSRGFDCQTHVKSTWVPAAKRRERQQKQQQMKRLRQDPKAAASASNSSLAcTSLTRLAPSPST 212 57899********************************************998888766665544333333333321333344444444 PP DUF702 91 lssaeskkeletsslPeevsseavfrcvrvssvdd.g....eeelaYqtavsigGhvfkGiLydqGlee 154 l ++ + + +lP+ev+s avf+cvrvs +++ g e++laYqt+v+igGh+f+GiLydqG+++ Kalax.0361s0031.1.p 213 LGEG-GRWATVGDELPREVRSCAVFKCVRVSPIEQqGeeglEQQLAYQTSVNIGGHLFRGILYDQGPQN 280 4444.456777888***************984322334679*******************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	2.2E-56	126	279	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	2.2E-27	128	170	IPR006510	Zinc finger, lateral root primordium type 1
TIGRFAMs	TIGR01624	1.0E-21	226	278	IPR006511	Lateral Root Primordium type 1, C-terminal

Sequence ? help Back to Top
Protein Sequence Length: 333 aa Download sequence Send to blast
MSGFFSLGGA NPQQPHHLNS SPETLIPPGN WFELRNEDLA ATYRRRGAIE LWHQQACHER 60 SSRSYDISNN PTSTSHQLGF GVGPTSVGAI DTSTQSDDQS VALGMITMSG SSCGVGLGNG 120 DGRRGSISCQ DCGNQAKKEC VHMRCRTCCM SRGFDCQTHV KSTWVPAAKR RERQQKQQQM 180 KRLRQDPKAA ASASNSSLAC TSLTRLAPSP STLGEGGRWA TVGDELPREV RSCAVFKCVR 240 VSPIEQQGEE GLEQQLAYQT SVNIGGHLFR GILYDQGPQN HHYHHHSDCI NLVSNTQQHA 300 SFGADPTAAT NLYQAPNATF PGASVVCTHF CP*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75520.1	2e-38	SHI-related sequence 5

Link Out ? help Back to Top
Phytozome	Kalax.0361s0031.1.p