PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kalax.0358s0012.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 212aa MW: 24338.1 Da PI: 5.8326 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 62.9 | 4.6e-20 | 14 | 68 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 kR++f+++q++ Le lF ++++p +++++LA+ lgL rqV +WFqNrRa+ + Kalax.0358s0012.1.p 14 EKRRRFSEKQIKSLEILFGSESKPEPRTKQQLASDLGLHPRQVAIWFQNRRARLR 68 58***************************************************87 PP | |||||||
2 | HD-ZIP_I/II | 110.1 | 1.6e-35 | 14 | 106 | 1 | 93 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 ek+rr+s++q+k+LE F +e+k ep+ K++la++Lgl+prqva+WFqnrRAR ++kq+E++y Lk+++d+l+++ e L+ke+++L ++ Kalax.0358s0012.1.p 14 EKRRRFSEKQIKSLEILFGSESKPEPRTKQQLASDLGLHPRQVAIWFQNRRARLRSKQIEREYGILKASHDTLASKFECLKKEKQTLDAQ 103 699*************************************************************************************99 PP HD-ZIP_I/II 91 lke 93 +++ Kalax.0358s0012.1.p 104 VQA 106 986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.3E-17 | 6 | 71 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.815 | 10 | 70 | IPR001356 | Homeobox domain |
SMART | SM00389 | 7.7E-16 | 12 | 74 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 1.9E-17 | 14 | 68 | IPR001356 | Homeobox domain |
CDD | cd00086 | 2.67E-14 | 15 | 71 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 6.6E-19 | 15 | 76 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 1.1E-5 | 41 | 50 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 45 | 68 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 1.1E-5 | 50 | 66 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 4.2E-16 | 70 | 111 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0009738 | Biological Process | abscisic acid-activated signaling pathway | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 212 aa Download sequence Send to blast |
MNLEMCGSRG GKNEKRRRFS EKQIKSLEIL FGSESKPEPR TKQQLASDLG LHPRQVAIWF 60 QNRRARLRSK QIEREYGILK ASHDTLASKF ECLKKEKQTL DAQVQALRDQ LRTDEGNTAG 120 SALPSKQSWR NEEPEIEDYF HESKGKPTYI LGSYNYETDN KSNPDCLKEE DYILNLAEPV 180 DSSLTSSENS WDSSCFLDQT CSSSLLWEFW S* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 13 | 18 | EKRRRF |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00320 | DAP | Transfer from AT2G46680 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A2N9FZI8 | 3e-48 | A0A2N9FZI8_FAGSY; Uncharacterized protein |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G46680.1 | 2e-47 | homeobox 7 |
Link Out ? help Back to Top | |
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Phytozome | Kalax.0358s0012.1.p |