PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kalax.0354s0044.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | ERF | ||||||||
Protein Properties | Length: 314aa MW: 34214.2 Da PI: 7.5019 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 64.7 | 2e-20 | 147 | 196 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GVr+++ +g+WvAeIr p++ r+r +lg+f+tae+Aa a+++a+ kl+g Kalax.0354s0044.1.p 147 LYRGVRQRH-WGKWVAEIRLPRN---RTRLWLGTFDTAEDAALAYDQAAHKLRG 196 59******9.**********955...5*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.53E-31 | 146 | 205 | No hit | No description |
PROSITE profile | PS51032 | 22.866 | 147 | 204 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.5E-22 | 147 | 205 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 3.3E-35 | 147 | 212 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.7E-32 | 147 | 205 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.1E-11 | 148 | 159 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 5.5E-14 | 148 | 196 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.1E-11 | 170 | 186 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 314 aa Download sequence Send to blast |
MAAATDFYSG GGSVFPDLFQ EEAFDTFINS PSPSSSSSSF NSSFGYQLPS VSSSHTGFYT 60 PFQLCSAEQS FNGGFTQPES IGLNSLTSAQ IRQIQSQLHL QQISTAPAAS PAKQARTFTP 120 SCGDRSFALL CPKPAPMKLA VPRQIKLYRG VRQRHWGKWV AEIRLPRNRT RLWLGTFDTA 180 EDAALAYDQA AHKLRGGAAR LNFPDFHSRP RSALHASVDA KVDAICNTLD QKPTPKNRKS 240 AAAKKDVKTE TPASPSVSSS SPALNQVWDE LQITSSPESG ISYLDFAEVE WDECDNKLSL 300 EKFPSVEIDW AAI* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 4e-20 | 146 | 204 | 1 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Swissprot | O65665 | 8e-59 | ERF60_ARATH; Ethylene-responsive transcription factor ERF060 | ||||
TrEMBL | A0A2I4H0H6 | 9e-62 | A0A2I4H0H6_JUGRE; ethylene-responsive transcription factor RAP2-4-like | ||||
TrEMBL | A0A2N9F9N0 | 1e-61 | A0A2N9F9N0_FAGSY; Uncharacterized protein | ||||
STRING | XP_010526650.1 | 8e-63 | (Tarenaya hassleriana) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G39780.1 | 1e-45 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Kalax.0354s0044.1.p |