PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0353s0001.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family MYB
Protein Properties Length: 340aa    MW: 38076 Da    PI: 6.0419
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0353s0001.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding57.72.7e-182168148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         +g+WT+eEd++l ++++q+G g+W+t ++  g+ R++k+c++rw +yl
  Kalax.0353s0001.1.p 21 KGPWTAEEDLKLREYIEQHGAGNWRTLPENAGLQRCGKSCRLRWTNYL 68
                         79********************************************97 PP
2Myb_DNA-binding53.65.2e-1774118147
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                          rgr++ eE+e +++++  lG++ W++Ia++++ gRt++++k++w+++
  Kalax.0353s0001.1.p  74 RGRFSFEEEEAIIQLHSVLGNK-WSAIAARLP-GRTDNEIKNYWNTH 118
                          89********************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.9E-241571IPR009057Homeodomain-like
PROSITE profilePS5129418.5761668IPR017930Myb domain
SuperFamilySSF466895.24E-3118115IPR009057Homeodomain-like
SMARTSM007173.3E-142070IPR001005SANT/Myb domain
PfamPF002493.4E-162168IPR001005SANT/Myb domain
CDDcd001672.37E-122368No hitNo description
PROSITE profilePS5129425.44669123IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.1E-2672123IPR009057Homeodomain-like
SMARTSM007172.2E-1673121IPR001005SANT/Myb domain
PfamPF002493.0E-1574118IPR001005SANT/Myb domain
CDDcd001671.90E-1276119No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    Send to blast
MGRAPATSSS SSRSSSSGLK KGPWTAEEDL KLREYIEQHG AGNWRTLPEN AGLQRCGKSC  60
RLRWTNYLRP DIKRGRFSFE EEEAIIQLHS VLGNKWSAIA ARLPGRTDNE IKNYWNTHIR  120
KRLLRMGLDP VTHAPRLDHL LGSTSQLSNL SNLLFALNQQ QQQQQMVNNP QLLNIVTTLL  180
ALNQKQNQIL YNGKTTSNNV PEDHNLYDYV PQHDDDHRFQ TYSSSFLQSS NQYGAGGFST  240
SSSMDDLIGQ DYKYGLDNQM LLPALVDENA AAVTSSGSLR SLSNNQQQQL SSDTTPFTSY  300
TSSPLHSSYT SNGLSTEEEI DSILNFEFPE GFDLSELLY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A6e-29191235108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may function in osmotic stress and wounding signaling pathways (Probable). Contributes to basal resistance against the herbivore Pieris rapae (white cabbage butterfly) feeding (PubMed:19517001). {ECO:0000269|PubMed:19517001, ECO:0000305|PubMed:12857823}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by light (PubMed:8980549). Induced by wounding, salt stress and abscisic acid (PubMed:12857823). Induced by the lepidopteran herbivore Pieris rapae (white cabbage butterfly) feeding (PubMed:19517001). {ECO:0000269|PubMed:12857823, ECO:0000269|PubMed:19517001, ECO:0000269|PubMed:8980549}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010095853.14e-95transcription factor MYB102
SwissprotQ9LDR82e-89MY102_ARATH; Transcription factor MYB102
TrEMBLW9R0B69e-94W9R0B6_9ROSA; Transcription factor
STRINGXP_010095853.12e-94(Morus notabilis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21440.11e-80MYB-like 102
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Huang KC,Lin WC,Cheng WH
    Salt hypersensitive mutant 9, a nucleolar APUM23 protein, is essential for salt sensitivity in association with the ABA signaling pathway in Arabidopsis.
    BMC Plant Biol., 2018. 18(1): p. 40
    [PMID:29490615]
  4. Zhu L,Guo J,Ma Z,Wang J,Zhou C
    Arabidopsis Transcription Factor MYB102 Increases Plant Susceptibility to Aphids by Substantial Activation of Ethylene Biosynthesis.
    Biomolecules, 2019.
    [PMID:29880735]