PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kalax.0352s0037.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | DBB | ||||||||
Protein Properties | Length: 325aa MW: 35635.9 Da PI: 8.1895 | ||||||||
Description | DBB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 16.4 | 1.9e-05 | 29 | 68 | 4 | 39 |
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg....Htv 39 + C +++ ++lfC+ + ++C +C ++H H + Kalax.0352s0037.1.p 29 KLCHSCNSAAAKLFCRRHSAFFCLNCDANIHLFtsasHLR 68 57*****************************544455655 PP | |||||||
2 | zf-B_box | 22.2 | 2.9e-07 | 70 | 114 | 4 | 42 |
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg.......Htvvpl 42 + C+ +e ++ C+ + lC+ C + +H + H++vp+ Kalax.0352s0037.1.p 70 PACDVCECAPAAVTCKADAASLCAVCDQDIH-SvnplsrrHERVPI 114 78*****************************.44888888999987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50119 | 9.869 | 26 | 71 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 0.083 | 26 | 63 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 3.54E-4 | 30 | 70 | No hit | No description |
PROSITE profile | PS50119 | 10.196 | 67 | 114 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 9.2E-13 | 67 | 114 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 8.97E-7 | 70 | 114 | No hit | No description |
Pfam | PF00643 | 4.9E-6 | 70 | 114 | IPR000315 | B-box-type zinc finger |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 325 aa Download sequence Send to blast |
MQMAGEEEES YVHGVAVSWP IVPPRAASKL CHSCNSAAAK LFCRRHSAFF CLNCDANIHL 60 FTSASHLRVP ACDVCECAPA AVTCKADAAS LCAVCDQDIH SVNPLSRRHE RVPIALLQVH 120 QPAPNKSAPP APIVICGFDV SDFLVPMAEE EILWMNLNQN SKLALCPSEL KSEDVIFPDF 180 DPLDDFDLPD PVSYGDFKHE TISYSDSVVP TDHCYISTSS PIANFEALIP KLLLMHVQPP 240 AKSTHSPIHL TAAAILPKTF GFLRRARSRQ RSGRLGFCGT RRRGRIESLR RRSGTLRGRH 300 MRRPDPGSRA GSPSGAIRMS SRIF* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G24790.2 | 6e-33 | CONSTANS-like 3 |
Link Out ? help Back to Top | |
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Phytozome | Kalax.0352s0037.1.p |