PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0351s0049.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family MYB
Protein Properties Length: 385aa    MW: 43503.9 Da    PI: 6.6404
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0351s0049.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding59.29.3e-1977124148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                          rg+WT+eEd  l  +++++G g+W++ ar+ g++Rt+k+c++rw++yl
  Kalax.0351s0049.1.p  77 RGPWTAEEDHTLMSYIAKHGEGRWNSLARCAGLKRTGKSCRLRWLNYL 124
                          89********************************************97 PP
2Myb_DNA-binding50.93.5e-16130173146
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                          rg+ T eE++l+++++ ++G++ W++Ia++++ gRt++++k++w++
  Kalax.0351s0049.1.p 130 RGNITLEEQLLILELHSRWGNR-WSKIAQHLP-GRTDNEIKNYWRT 173
                          7999******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129424.51672128IPR017930Myb domain
SuperFamilySSF466892.28E-3174171IPR009057Homeodomain-like
SMARTSM007174.1E-1476126IPR001005SANT/Myb domain
PfamPF002493.8E-1777124IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.1E-2478131IPR009057Homeodomain-like
CDDcd001672.23E-1179124No hitNo description
PROSITE profilePS5129418.707129179IPR017930Myb domain
SMARTSM007171.3E-14129177IPR001005SANT/Myb domain
PfamPF002497.1E-15130173IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.0E-22132178IPR009057Homeodomain-like
CDDcd001671.61E-7150173No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 385 aa     Download sequence    Send to blast
MDGYMNGRAV AAEGLLSHHL QQQQEQERER YYSNMSSSGG GGGALSSVNS NNHHKVQSSS  60
SGEEEDDEMA MMMDLRRGPW TAEEDHTLMS YIAKHGEGRW NSLARCAGLK RTGKSCRLRW  120
LNYLRPDVRR GNITLEEQLL ILELHSRWGN RWSKIAQHLP GRTDNEIKNY WRTRVQKHAK  180
QLKCDVNSKQ FQDTMRYLWM PRLVERIQAA NGASSAAQNP HNPLNHTLSN LTTPILHHHP  240
DMIMPPAASA PPRSHHHFTN SSYVGSENSS TTAASSDSFG AQVSPVSDMS ENYYMPASYN  300
LNNNVAYFNG GQIGYSDSLI SPAGYYHPQA PDFQSTEYNC NNNNSDVVSN NLDQWVMDGG  360
DLPDNMWNVE DIWHLQQQQF NNNY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-25741774106B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002316060.21e-126transcription factor MYB108
RefseqXP_011027944.11e-126PREDICTED: transcription factor MYB108-like
TrEMBLB9HX621e-125B9HX62_POPTR; Uncharacterized protein
STRINGPOPTR_0010s15970.11e-126(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06490.12e-80myb domain protein 108