PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kalax.0349s0038.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | GRF | ||||||||
Protein Properties | Length: 325aa MW: 35516.1 Da PI: 8.0224 | ||||||||
Description | GRF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRC | 79.4 | 3.3e-25 | 73 | 117 | 1 | 45 |
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 d+epgrCrRtDGKkWRCs+++++++k+CErH+hrgr+rsrk++e+ Kalax.0349s0038.1.p 73 DPEPGRCRRTDGKKWRCSKDAYPDSKYCERHMHRGRNRSRKPVES 117 79****************************************986 PP | |||||||
2 | QLQ | 60.4 | 5.2e-21 | 11 | 47 | 1 | 37 |
QLQ 1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 s+FT +Q+q+L++Q+l+yKyL+a++ +Pp+L+++iqk Kalax.0349s0038.1.p 11 SPFTVSQWQELEHQALIYKYLMAGLAIPPDLVLPIQK 47 89*********************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00951 | 1.7E-11 | 11 | 47 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
Pfam | PF08880 | 6.9E-15 | 12 | 46 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51666 | 23.416 | 12 | 47 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51667 | 25.762 | 73 | 117 | IPR014977 | WRC domain |
Pfam | PF08879 | 3.7E-21 | 74 | 116 | IPR014977 | WRC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005524 | Molecular Function | ATP binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 325 aa Download sequence Send to blast |
MLRSSSSASA SPFTVSQWQE LEHQALIYKY LMAGLAIPPD LVLPIQKSFE AVSSRFFTHP 60 TMGYCSFYGK KIDPEPGRCR RTDGKKWRCS KDAYPDSKYC ERHMHRGRNR SRKPVESPQP 120 VSQLASSTVT SLNVNAGGAG AGNATVFPSL PLQAFGGGMQ SGSLSSGTNH QSHHFNEDHI 180 PYGIPSKDYR YVHGLKPETG EHNFFGDASA SNRSLQIENA WSMLPSQVSA FTSSKPSSNS 240 SSLLQSDYTQ NPLFSPDFAS SDSAKQGNSL RPFFDEWPKA RDSWSGLEEE RSNPGSYSTT 300 HLSMSIPMGS SDFSATSSQS PNEN* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024171491.1 | 1e-149 | growth-regulating factor 4-like | ||||
TrEMBL | A0A2P6SQ10 | 1e-148 | A0A2P6SQ10_ROSCH; Putative transcription factor interactor and regulator C3H-WRC/GRF family | ||||
STRING | Gorai.003G057700.1 | 1e-146 | (Gossypium raimondii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13960.1 | 2e-45 | growth-regulating factor 5 |
Link Out ? help Back to Top | |
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Phytozome | Kalax.0349s0038.1.p |