PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kalax.0349s0024.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | MYB | ||||||||
Protein Properties | Length: 379aa MW: 42267.4 Da PI: 7.1138 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 56.1 | 8.8e-18 | 69 | 116 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++l+ +++q+G g+W++ + + g+ R++k+c++rw +yl Kalax.0349s0024.1.p 69 KGPWTPEEDQKLLAYIEQHGHGSWRSLPLKAGLQRCGKSCRLRWTNYL 116 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 52.9 | 8.4e-17 | 122 | 167 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+++ +E++ +++++++lG++ W++Ia +++ +Rt++++k++w+++l Kalax.0349s0024.1.p 122 RGKFSLQEEQTIIQLHALLGNR-WSAIATHLP-KRTDNEIKNYWNTHL 167 89********************.*********.************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.2E-25 | 60 | 119 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 18.138 | 64 | 116 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.61E-30 | 66 | 163 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 9.2E-14 | 68 | 118 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.9E-16 | 69 | 116 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.71E-11 | 71 | 116 | No hit | No description |
PROSITE profile | PS51294 | 25.891 | 117 | 171 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.6E-26 | 120 | 171 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.2E-16 | 121 | 169 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.5E-16 | 122 | 167 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 8.67E-12 | 124 | 167 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000902 | Biological Process | cell morphogenesis | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0009739 | Biological Process | response to gibberellin | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:0046686 | Biological Process | response to cadmium ion | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 379 aa Download sequence Send to blast |
MDIIYSSLLH VFITVYPQDV PVASRKKQYS TSNLALYLSI TIKTTTLSLC SITDSMGRSP 60 CCDKVGLKKG PWTPEEDQKL LAYIEQHGHG SWRSLPLKAG LQRCGKSCRL RWTNYLRPDI 120 KRGKFSLQEE QTIIQLHALL GNRWSAIATH LPKRTDNEIK NYWNTHLKKR LMKMGIDPVT 180 HKPKSDALVS NNSSSSNNLI DGHSSKSAAN LSHMAQWESA RLEAEARLVR ESRLRSNPFQ 240 TPHHQQLLLP DTNPNHEITG GLLFGGPADL ESPSSTTLSF PGPVVSVSES RCSEYLLESS 300 CGEVKETWTP ESLREDHEDH HAFNNNAIHN NSSAEAGFTE LLLSNTAGGC QEDEDNKNYW 360 NTILDLVNTS PAHDSPIF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 2e-26 | 67 | 171 | 5 | 108 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the control of epidermal cell morphogenesis in petals. Promotes unidirectional cell expansion once outgrowth has been initiated (PubMed:17376813). Coordinately with WIN1/SHN1, participates in the regulation of cuticle biosynthesis and wax accumulation in reproductive organs and trichomes. Functions in cuticle nanoridge formation in petals and stamens, and in morphogenesis of petal conical cells and trichomes (PubMed:23709630). Functions as a major regulator of cuticle formation in vegetative organs by regulating the cuticle biosynthesis genes CYP86A8/LCR and CER1 (PubMed:24169067). {ECO:0000269|PubMed:17376813, ECO:0000269|PubMed:23709630, ECO:0000269|PubMed:24169067}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017624157.1 | 1e-128 | PREDICTED: protein ODORANT1-like | ||||
Swissprot | Q9LXF1 | 1e-113 | MYB16_ARATH; Transcription factor MYB16 | ||||
TrEMBL | A0A328D8Q9 | 1e-127 | A0A328D8Q9_9ASTE; Uncharacterized protein | ||||
TrEMBL | A0A484K6W0 | 1e-128 | A0A484K6W0_9ASTE; Uncharacterized protein | ||||
STRING | Gorai.011G122800.1 | 1e-126 | (Gossypium raimondii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G15310.1 | 1e-112 | myb domain protein 16 |
Link Out ? help Back to Top | |
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Phytozome | Kalax.0349s0024.1.p |
Publications ? help Back to Top | |||
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