PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kalax.0345s0030.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 210aa MW: 23577.4 Da PI: 6.2403 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 90.7 | 7.5e-29 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krie+ks rqvtfskR+ g++KKA+ELSvLCd++va+ ifss+gk+yeyss Kalax.0345s0030.2.p 9 KRIEDKSSRQVTFSKRKSGLMKKANELSVLCDVDVALFIFSSKGKMYEYSS 59 79***********************************************96 PP | |||||||
2 | K-box | 19.7 | 3.5e-08 | 87 | 151 | 13 | 77 |
K-box 13 kaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqi 77 ++++++ e a L i+ ++ +R l ++L++ eL qL q+Le+ l++ R kK++ + e+ Kalax.0345s0030.2.p 87 TEQKCHAEDAGLSGSINLMRLINRSLDPTTDNPLNVPELTQLDQHLEDLLRHTRFKKEQAMWESA 151 46778888888888888888777888888889****************************98864 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 31.09 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 2.0E-38 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 7.95E-38 | 2 | 73 | No hit | No description |
SuperFamily | SSF55455 | 7.19E-31 | 2 | 83 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.4E-28 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 3.4E-26 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.4E-28 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.4E-28 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 1.0E-5 | 87 | 153 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 6.649 | 88 | 176 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 210 aa Download sequence Send to blast |
MGRGKVELKR IEDKSSRQVT FSKRKSGLMK KANELSVLCD VDVALFIFSS KGKMYEYSSG 60 SSLKRILEHH QSPFEAENAA RKHVLETEQK CHAEDAGLSG SINLMRLINR SLDPTTDNPL 120 NVPELTQLDQ HLEDLLRHTR FKKEQAMWES ALATVEEEGH SNQRLKHFQG DDETGGRSIY 180 ELQNPFLESP SAHFISPDAV DDDSSPPRG* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6byy_A | 5e-21 | 1 | 87 | 1 | 87 | MEF2 CHIMERA |
6byy_B | 5e-21 | 1 | 87 | 1 | 87 | MEF2 CHIMERA |
6byy_C | 5e-21 | 1 | 87 | 1 | 87 | MEF2 CHIMERA |
6byy_D | 5e-21 | 1 | 87 | 1 | 87 | MEF2 CHIMERA |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018815444.1 | 1e-44 | PREDICTED: truncated transcription factor CAULIFLOWER A-like isoform X1 | ||||
TrEMBL | W0FFX1 | 3e-43 | W0FFX1_JUGRE; Flowering locus C-like protein | ||||
STRING | XP_009344924.1 | 4e-43 | (Pyrus x bretschneideri) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G30260.1 | 6e-36 | AGAMOUS-like 79 |
Link Out ? help Back to Top | |
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Phytozome | Kalax.0345s0030.2.p |