PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0345s0030.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family MIKC_MADS
Protein Properties Length: 210aa    MW: 23577.4 Da    PI: 6.2403
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0345s0030.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF90.77.5e-29959151
                         S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
               SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                         krie+ks rqvtfskR+ g++KKA+ELSvLCd++va+ ifss+gk+yeyss
  Kalax.0345s0030.1.p  9 KRIEDKSSRQVTFSKRKSGLMKKANELSVLCDVDVALFIFSSKGKMYEYSS 59
                         79***********************************************96 PP
2K-box19.73.5e-08871511377
                K-box  13 kaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqi 77 
                          ++++++ e a L   i+ ++  +R l     ++L++ eL qL q+Le+ l++ R kK++ + e+ 
  Kalax.0345s0030.1.p  87 TEQKCHAEDAGLSGSINLMRLINRSLDPTTDNPLNVPELTQLDQHLEDLLRHTRFKKEQAMWESA 151
                          46778888888888888888777888888889****************************98864 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006631.09161IPR002100Transcription factor, MADS-box
SMARTSM004322.0E-38160IPR002100Transcription factor, MADS-box
CDDcd002657.95E-38273No hitNo description
SuperFamilySSF554557.19E-31283IPR002100Transcription factor, MADS-box
PRINTSPR004041.4E-28323IPR002100Transcription factor, MADS-box
PfamPF003193.4E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004041.4E-282338IPR002100Transcription factor, MADS-box
PRINTSPR004041.4E-283859IPR002100Transcription factor, MADS-box
PfamPF014861.0E-587153IPR002487Transcription factor, K-box
PROSITE profilePS512976.64988176IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 210 aa     Download sequence    Send to blast
MGRGKVELKR IEDKSSRQVT FSKRKSGLMK KANELSVLCD VDVALFIFSS KGKMYEYSSG  60
SSLKRILEHH QSPFEAENAA RKHVLETEQK CHAEDAGLSG SINLMRLINR SLDPTTDNPL  120
NVPELTQLDQ HLEDLLRHTR FKKEQAMWES ALATVEEEGH SNQRLKHFQG DDETGGRSIY  180
ELQNPFLESP SAHFISPDAV DDDSSPPRG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A5e-21187187MEF2 CHIMERA
6byy_B5e-21187187MEF2 CHIMERA
6byy_C5e-21187187MEF2 CHIMERA
6byy_D5e-21187187MEF2 CHIMERA
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018815444.11e-44PREDICTED: truncated transcription factor CAULIFLOWER A-like isoform X1
TrEMBLW0FFX13e-43W0FFX1_JUGRE; Flowering locus C-like protein
STRINGXP_009344924.14e-43(Pyrus x bretschneideri)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G30260.16e-36AGAMOUS-like 79