PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.0341s0051.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

GRAS

Protein Properties

Length: 802aa MW: 89093.5 Da PI: 4.7537

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0341s0051.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	368.4	9.5e-113	428	798	1	373
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPi 90 l++lL+ cA+avss+d + a++lL ++++ asp gd +qRla++f+++L+ar+a++++++y + ++++ + ++ l+a++++ ++ P+ Kalax.0341s0051.1.p 428 LRTLLVLCAQAVSSDDWRTANQLLRQIRQYASPLGDGTQRLAHCFANGLEARMAGTGNQIYTSRSSRRIT---AADILKAYQVYLHAIPF 514 5789*******************************************************887777777...9************ PP GRAS 91 lkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfef 178 +++ aNq+I +a+++++++Hi+Df+i +G+QWp ++q L+ R++gpp+lRiTg++ p++g +e++e tg+rL+k+++++gvpfe+ Kalax.0341s0051.1.p 515 KQIAMSFANQMIFQAASKAQTLHIVDFGILYGFQWPIFIQCLSRREGGPPKLRITGIDLPQPGfrPAERVEDTGRRLEKYCKRFGVPFEY 604 **********************************************************9*********************** PP GRAS 179 nvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalf 268 + +ak+++++++e+L++k++E laVn+ ++l++llde+v+++s+r++vL+l+++++P+++++ + ++n++ F++rf eal yysalf Kalax.0341s0051.1.p 605 YA-IAKKWDTIRIEDLSIKRNEFLAVNCLFRLKNLLDETVDVTSPRNAVLSLIREMNPDIFTHGIANGSYNAPFFVTRFREALFYYSALF 693 .7************************************************************************************ PP GRAS 269 dsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgsl 358 d ++a++pr+++er + E el g+++ nv+aceg er+er et+++W+ r ++aGF+++pl+++++++ + ++ + + + ++e+ +l Kalax.0341s0051.1.p 694 DVFDATIPRDNQERLMFEGELYGKDAINVIACEGVERVERPETYKQWQVRCNRAGFRQLPLDKEVMTKLRNKMEAWYHKDFVIDEDGSWL 783 *************************************************************************888****** PP GRAS 359 vlgWkdrpLvsvSaW 373 +lgWk+r ++ +++W Kalax.0341s0051.1.p 784 LLGWKGRIVFGATCW 798 ************* PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	67.647	402	779	IPR005202	Transcription factor GRAS
Pfam	PF03514	3.3E-110	428	798	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 802 aa Download sequence Send to blast
MVMDPYLNGF RGFDDDDDKG VAEFDSFAGN EIHLADGGVG SLDFIDSLIV SPFRGGHGGA 60 AADSTLPFFG MSPQRDSVSG EGGDLSDPVF KYINQMLMEE DMGEKAWMLH DSLALSVAEK 120 SLYDALGEKY PGRPSVLVDS PDGSTSQSFG FSESGSSGSS NANGASYALN DAYQSDHVPP 180 YQPVSLTQNS VPAADVSQPS SFGTGKGFPL RGFDQGVNDF ESNSSSLKGS GSGNSYSSTF 240 NGFDLNGNGL GNAPLSSFQA SEIFNDSEYI MQFQRGVEEA SKFLPKTSNL IIDLDKYQPV 300 VPEPNEVGLL ASAGRSYEDE DKSFVNGFPA AEAEKNVKES SANGSRGNRS RGRKRGEIEM 360 EDERMNKQSA VYVDEEELSV QFDNVLLHCR VKEEATDSDV CERSPSEKNR NLNESGRDKK 420 QETDAVDLRT LLVLCAQAVS SDDWRTANQL LRQIRQYASP LGDGTQRLAH CFANGLEARM 480 AGTGNQIYTS RSSRRITAAD ILKAYQVYLH AIPFKQIAMS FANQMIFQAA SKAQTLHIVD 540 FGILYGFQWP IFIQCLSRRE GGPPKLRITG IDLPQPGFRP AERVEDTGRR LEKYCKRFGV 600 PFEYYAIAKK WDTIRIEDLS IKRNEFLAVN CLFRLKNLLD ETVDVTSPRN AVLSLIREMN 660 PDIFTHGIAN GSYNAPFFVT RFREALFYYS ALFDVFDATI PRDNQERLMF EGELYGKDAI 720 NVIACEGVER VERPETYKQW QVRCNRAGFR QLPLDKEVMT KLRNKMEAWY HKDFVIDEDG 780 SWLLLGWKGR IVFGATCWIP A*

Sequence ? help Back to Top

Protein Sequence Length: 802 aa Download sequence Send to blast

MVMDPYLNGF RGFDDDDDKG VAEFDSFAGN EIHLADGGVG SLDFIDSLIV SPFRGGHGGA  60
AADSTLPFFG MSPQRDSVSG EGGDLSDPVF KYINQMLMEE DMGEKAWMLH DSLALSVAEK  120
SLYDALGEKY PGRPSVLVDS PDGSTSQSFG FSESGSSGSS NANGASYALN DAYQSDHVPP  180
YQPVSLTQNS VPAADVSQPS SFGTGKGFPL RGFDQGVNDF ESNSSSLKGS GSGNSYSSTF  240
NGFDLNGNGL GNAPLSSFQA SEIFNDSEYI MQFQRGVEEA SKFLPKTSNL IIDLDKYQPV  300
VPEPNEVGLL ASAGRSYEDE DKSFVNGFPA AEAEKNVKES SANGSRGNRS RGRKRGEIEM  360
EDERMNKQSA VYVDEEELSV QFDNVLLHCR VKEEATDSDV CERSPSEKNR NLNESGRDKK  420
QETDAVDLRT LLVLCAQAVS SDDWRTANQL LRQIRQYASP LGDGTQRLAH CFANGLEARM  480
AGTGNQIYTS RSSRRITAAD ILKAYQVYLH AIPFKQIAMS FANQMIFQAA SKAQTLHIVD  540
FGILYGFQWP IFIQCLSRRE GGPPKLRITG IDLPQPGFRP AERVEDTGRR LEKYCKRFGV  600
PFEYYAIAKK WDTIRIEDLS IKRNEFLAVN CLFRLKNLLD ETVDVTSPRN AVLSLIREMN  660
PDIFTHGIAN GSYNAPFFVT RFREALFYYS ALFDVFDATI PRDNQERLMF EGELYGKDAI  720
NVIACEGVER VERPETYKQW QVRCNRAGFR QLPLDKEVMT KLRNKMEAWY HKDFVIDEDG  780
SWLLLGWKGR IVFGATCWIP A*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_A	6e-53	413	800	3	379	Protein SCARECROW
5b3h_D	6e-53	413	800	3	379	Protein SCARECROW
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018836067.1	0.0	PREDICTED: scarecrow-like protein 34
Swissprot	Q9XE58	0.0	SCL14_ARATH; Scarecrow-like protein 14
TrEMBL	A0A314ZFC9	0.0	A0A314ZFC9_PRUYE; Scarecrow-like protein 14
STRING	POPTR_0009s03800.1	0.0	(Populus trichocarpa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07530.1	0.0	SCARECROW-like 14

Link Out ? help Back to Top
Phytozome	Kalax.0341s0051.1.p

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]