PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kalax.0341s0010.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | TALE | ||||||||
Protein Properties | Length: 741aa MW: 81614.8 Da PI: 6.9653 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 28.8 | 2.1e-09 | 574 | 611 | 19 | 54 |
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yp+ +++ LA+++gLt +qV++WF N R + Kalax.0341s0010.2.p 574 FEHflHPYPTDTDKHLLATQTGLTRSQVSNWFINARVR 611 664459******************************88 PP | |||||||
2 | BELL | 99.9 | 2e-32 | 428 | 497 | 3 | 72 |
BELL 3 qelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 + q kkakLl +l+eV +rY+qy++q+q+v+s+Fe vagl +a+pY+s Alk++SrhF Lk ai++q+ Kalax.0341s0010.2.p 428 PDYQLKKAKLLYMLDEVTRRYRQYYHQMQMVVSAFESVAGLAAATPYVSSALKTVSRHFNHLKHAISDQL 497 5789***************************************************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00574 | 1.5E-38 | 331 | 495 | IPR006563 | POX domain |
Pfam | PF07526 | 2.1E-39 | 336 | 494 | IPR006563 | POX domain |
PROSITE profile | PS50071 | 11.92 | 552 | 615 | IPR001356 | Homeobox domain |
CDD | cd00086 | 6.08E-13 | 555 | 616 | No hit | No description |
SMART | SM00389 | 3.1E-9 | 555 | 619 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 8.98E-17 | 557 | 621 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 4.5E-28 | 558 | 619 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 2.3E-17 | 572 | 611 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 741 aa Download sequence Send to blast |
MDAFMKRKFI SDQSHVAQQS RREKLRVQHQ HRSPSRAGGD RVDDYTSSLE VVQPVFSRDL 60 NQVGDNEINA DVNLMYHPTR ISSEQACTFA GNSTNLVLSG VDGSLRPRRE NYMENCGVWK 120 SVGGSRENAS VGVATDLSAF EMRAKLSTTG QLQSQFQYGE VSFDPQSDYR NALSDEVTTA 180 VAELQSVGGS TCDYWGSYGG NHEHVRIVPY GGYQLDGEPL PNGSTWNGEM SSLHSRIDQM 240 VVDSHSQGLS LSLCSNPATT MIAGSQYGDA RIPQSIPLGT IANISFEENS KAVGRTNFIR 300 TANVGQGDSL QEPVGPSSSY HHQLGPLGPF TGYATILKSS KFLKPAQQLL NEYCGVIGML 360 ASSSTVAVSE RNTGETGELA TAGISIESEV ETTNAGDISG ISTSTHQDSH EIINGATSSP 420 GPGESHRPDY QLKKAKLLYM LDEVTRRYRQ YYHQMQMVVS AFESVAGLAA ATPYVSSALK 480 TVSRHFNHLK HAISDQLWRI KTFLGENFSP PPSGIRYNKG GDLNAKRLKL NEHCFQRHSY 540 GGSNMGLLEP QQHIWRPQRG LPERAVSVLK AWLFEHFLHP YPTDTDKHLL ATQTGLTRSQ 600 VSNWFINARV RLWKPMVEEI HMLETKGLAE RDSNAVKDDN RSANVDEPHP KADHSLHKMA 660 ANSMACVSLE CSGMDEGMTS ISRYHQTAHG HEITGIGSVS LTLGLRQSAG NHHQQSAYFH 720 QQQDRMRRHL EGHTVHEYAG * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4xrs_A | 4e-16 | 561 | 618 | 1 | 58 | Homeobox protein Meis1 |
4xrs_B | 4e-16 | 561 | 618 | 1 | 58 | Homeobox protein Meis1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G27990.1 | 3e-83 | BEL1-like homeodomain 8 |
Link Out ? help Back to Top | |
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Phytozome | Kalax.0341s0010.2.p |