PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0341s0010.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family TALE
Protein Properties Length: 741aa    MW: 81614.8 Da    PI: 6.9653
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0341s0010.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.82.1e-095746111954
                          HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
             Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                          Fe   ++yp+ +++  LA+++gLt +qV++WF N R +
  Kalax.0341s0010.1.p 574 FEHflHPYPTDTDKHLLATQTGLTRSQVSNWFINARVR 611
                          664459******************************88 PP
2BELL99.92e-32428497372
                 BELL   3 qelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                           + q kkakLl +l+eV +rY+qy++q+q+v+s+Fe vagl +a+pY+s Alk++SrhF  Lk ai++q+
  Kalax.0341s0010.1.p 428 PDYQLKKAKLLYMLDEVTRRYRQYYHQMQMVVSAFESVAGLAAATPYVSSALKTVSRHFNHLKHAISDQL 497
                          5789***************************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005741.5E-38331495IPR006563POX domain
PfamPF075262.1E-39336494IPR006563POX domain
PROSITE profilePS5007111.92552615IPR001356Homeobox domain
CDDcd000866.08E-13555616No hitNo description
SMARTSM003893.1E-9555619IPR001356Homeobox domain
SuperFamilySSF466898.98E-17557621IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.5E-28558619IPR009057Homeodomain-like
PfamPF059202.3E-17572611IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 741 aa     Download sequence    Send to blast
MDAFMKRKFI SDQSHVAQQS RREKLRVQHQ HRSPSRAGGD RVDDYTSSLE VVQPVFSRDL  60
NQVGDNEINA DVNLMYHPTR ISSEQACTFA GNSTNLVLSG VDGSLRPRRE NYMENCGVWK  120
SVGGSRENAS VGVATDLSAF EMRAKLSTTG QLQSQFQYGE VSFDPQSDYR NALSDEVTTA  180
VAELQSVGGS TCDYWGSYGG NHEHVRIVPY GGYQLDGEPL PNGSTWNGEM SSLHSRIDQM  240
VVDSHSQGLS LSLCSNPATT MIAGSQYGDA RIPQSIPLGT IANISFEENS KAVGRTNFIR  300
TANVGQGDSL QEPVGPSSSY HHQLGPLGPF TGYATILKSS KFLKPAQQLL NEYCGVIGML  360
ASSSTVAVSE RNTGETGELA TAGISIESEV ETTNAGDISG ISTSTHQDSH EIINGATSSP  420
GPGESHRPDY QLKKAKLLYM LDEVTRRYRQ YYHQMQMVVS AFESVAGLAA ATPYVSSALK  480
TVSRHFNHLK HAISDQLWRI KTFLGENFSP PPSGIRYNKG GDLNAKRLKL NEHCFQRHSY  540
GGSNMGLLEP QQHIWRPQRG LPERAVSVLK AWLFEHFLHP YPTDTDKHLL ATQTGLTRSQ  600
VSNWFINARV RLWKPMVEEI HMLETKGLAE RDSNAVKDDN RSANVDEPHP KADHSLHKMA  660
ANSMACVSLE CSGMDEGMTS ISRYHQTAHG HEITGIGSVS LTLGLRQSAG NHHQQSAYFH  720
QQQDRMRRHL EGHTVHEYAG *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4xrs_A4e-16561618158Homeobox protein Meis1
4xrs_B4e-16561618158Homeobox protein Meis1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27990.13e-83BEL1-like homeodomain 8