PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0340s0006.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family MYB
Protein Properties Length: 367aa    MW: 40255.2 Da    PI: 6.3902
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0340s0006.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.61e-162572148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         rg+WT+eEdell  ++++ G g+W+t +++ g+ R++k+c++rw +yl
  Kalax.0340s0006.1.p 25 RGPWTPEEDELLSSYINREGEGRWRTLPKRAGLLRCGKSCRLRWMNYL 72
                         89******************************99************97 PP
2Myb_DNA-binding46.77.2e-1583123648
                          HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding   6 teEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                          ++E++l+++++++lG++ W++Ia +++ gRt++++k++w+++l
  Kalax.0340s0006.1.p  83 PDEEDLILRLHRLLGNR-WSLIAGRIP-GRTDNEIKNYWNTHL 123
                          89***************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.3E-211674IPR009057Homeodomain-like
PROSITE profilePS5129415.7472072IPR017930Myb domain
SuperFamilySSF466892.75E-2822119IPR009057Homeodomain-like
SMARTSM007171.3E-122474IPR001005SANT/Myb domain
PfamPF002497.1E-152572IPR001005SANT/Myb domain
CDDcd001671.89E-102772No hitNo description
PROSITE profilePS5129424.39773127IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.3E-2475128IPR009057Homeodomain-like
SMARTSM007172.7E-1377125IPR001005SANT/Myb domain
PfamPF002491.2E-1383123IPR001005SANT/Myb domain
CDDcd001671.47E-1183123No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010090Biological Processtrichome morphogenesis
GO:0010468Biological Processregulation of gene expression
GO:0048354Biological Processmucilage biosynthetic process involved in seed coat development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 367 aa     Download sequence    Send to blast
MRKPTSSTTS TSSATPCCTK VGLKRGPWTP EEDELLSSYI NREGEGRWRT LPKRAGLLRC  60
GKSCRLRWMN YLRPSVKRGQ IAPDEEDLIL RLHRLLGNRW SLIAGRIPGR TDNEIKNYWN  120
THLSKKLINQ GIDPRTHKPL SNTTTDPSPS AAAKDDPKAS NLSSALASAA NPNDNTFSAT  180
GLDDVVVNNN GNQRLVQSYV VEDEDDHFQA MMTGNAGLVG PGGNSNFLNS RTSNNNDNEQ  240
DQHVDDEINY SSCGGEDVFS SFLNSLINED EVFINNNDTG HHLQYPHNQL LQVHHHPIMS  300
GIVTPPPSAD NAFGYVNGNN GGVDHSGWET SAALMSSSAG NAAYGELNVC GSRRRINEHH  360
DDQRQL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C9e-25231272105C-Myb DNA-Binding Domain
1msf_C9e-25231272105C-Myb DNA-Binding Domain
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021594698.12e-99transcription repressor MYB5-like
TrEMBLA0A0A0R6211e-101A0A0A0R621_PAESU; MYB transcription factor
STRINGcassava4.1_011594m6e-99(Manihot esculenta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13540.11e-79myb domain protein 5