PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.0338s0028.2.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

bZIP

Protein Properties

Length: 400aa MW: 44120.8 Da PI: 7.8112

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0338s0028.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	49.3	1.1e-15	199	251	3	55
XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkke 55 + kr rr+ +NRe+ArrsR+RK+a + eLe+ v++L eN +L k+l ++++ Kalax.0338s0028.2.p 199 DAKRVRRMLSNRESARRSRRRKQAHLTELETQVAQLRVENCSLTKRLTDISQK 251 689*****************************************998877765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	2.1E-12	196	253	No hit	No description
SMART	SM00338	2.0E-16	197	261	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	11.369	199	253	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	3.1E-14	200	250	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	1.83E-11	201	250	No hit	No description
PROSITE pattern	PS00036	0	204	219	IPR004827	Basic-leucine zipper domain
Pfam	PF12498	1.2E-33	268	395	IPR020983	Basic leucine-zipper, C-terminal

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 400 aa Download sequence Send to blast
MDRVFSMEGM VEQLWTPSQL DNVNASPSSK TKLNRSSSEW AFQLFIQENS TSDHSPAAKQ 60 EEHYDDDVVE IKDQRAAPLN LPIDSDEYQA FLKTRLDLAC AAVAMTRASI GKPQDSSTST 120 DSGSKASQVH SQVNRKGSTF ESSKQKNRNE PLGNSSLQAK PGKSVVRVKS TTRGSSRELS 180 DDDELEGDTE ITGDIDHTDA KRVRRMLSNR ESARRSRRRK QAHLTELETQ VAQLRVENCS 240 LTKRLTDISQ KFNDAAVDNR VLKADVETLR AKVKMAEETV KRVTGQSPMF QTMSETSTFS 300 YDWNASDIST DAAVPIQDDR THHISQQHIL NPLAATDTLD PGVTHSLSNN PTTKNIHPNT 360 SAAVPIASSG NKIGRTSSMQ RVASLEHLQK RIRGNSSAN*

Sequence ? help Back to Top

Protein Sequence Length: 400 aa Download sequence Send to blast

MDRVFSMEGM VEQLWTPSQL DNVNASPSSK TKLNRSSSEW AFQLFIQENS TSDHSPAAKQ  60
EEHYDDDVVE IKDQRAAPLN LPIDSDEYQA FLKTRLDLAC AAVAMTRASI GKPQDSSTST  120
DSGSKASQVH SQVNRKGSTF ESSKQKNRNE PLGNSSLQAK PGKSVVRVKS TTRGSSRELS  180
DDDELEGDTE ITGDIDHTDA KRVRRMLSNR ESARRSRRRK QAHLTELETQ VAQLRVENCS  240
LTKRLTDISQ KFNDAAVDNR VLKADVETLR AKVKMAEETV KRVTGQSPMF QTMSETSTFS  300
YDWNASDIST DAAVPIQDDR THHISQQHIL NPLAATDTLD PGVTHSLSNN PTTKNIHPNT  360
SAAVPIASSG NKIGRTSSMQ RVASLEHLQK RIRGNSSAN*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	213	220	RRSRRRKQ
2	215	220	SRRRKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the G-box-like motif (5'-ACGTGGC-3') of the chalcone synthase (CHS) gene promoter. G-box and G-box-like motifs are defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009787496.1	1e-123	PREDICTED: light-inducible protein CPRF2-like
Refseq	XP_016450151.1	1e-123	PREDICTED: light-inducible protein CPRF2-like
Swissprot	Q99090	1e-110	CPRF2_PETCR; Light-inducible protein CPRF2
TrEMBL	A0A1S3YD35	1e-122	A0A1S3YD35_TOBAC; light-inducible protein CPRF2-like
TrEMBL	A0A1U7XCW9	1e-122	A0A1U7XCW9_NICSY; light-inducible protein CPRF2-like
STRING	XP_009787496.1	1e-122	(Nicotiana sylvestris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G28770.2	7e-68	bZIP family protein

Link Out ? help Back to Top
Phytozome	Kalax.0338s0028.2.p

Publications ? help Back to Top
Weisshaar B,Armstrong GA,Block A,da Costa e Silva O,Hahlbrock K Light-inducible and constitutively expressed DNA-binding proteins recognizing a plant promoter element with functional relevance in light responsiveness. EMBO J., 1991. 10(7): p. 1777-86 [PMID:2050115]