PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0337s0029.2.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family AP2
Protein Properties Length: 479aa    MW: 52078.2 Da    PI: 8.7675
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0337s0029.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.23.6e-17168217155
                  AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                          s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  Kalax.0337s0029.2.p 168 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 217
                          78*******************......55************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541717.19E-16168226IPR016177DNA-binding domain
PfamPF008472.7E-9168217IPR001471AP2/ERF domain
PROSITE profilePS5103217.846169225IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.5E-17169225IPR001471AP2/ERF domain
CDDcd000188.26E-12169227No hitNo description
SMARTSM003806.1E-32169231IPR001471AP2/ERF domain
SuperFamilySSF541715.23E-6260304IPR016177DNA-binding domain
CDDcd000186.01E-13260305No hitNo description
SMARTSM003803.1E-12261309IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 479 aa     Download sequence    Send to blast
MWDLNAEMLT DDVPQAQRNV NHQTAERRAR AGRMMDDAGT STSSMIVNAA AAGDEDSNSS  60
NTARTFTFDI IMNSNTSPHH HLQDNIIASS SSLAAANARV FYSAAPNFGD GGVGSRSSSS  120
ATSPKSDWLN LSFADSAEQS EMRLLQQQQQ QQQMPVKKSR RGPRSRSSQY RGVTFYRRTG  180
RWESHIWDCG KQVYLGGFDT AHAAARAYDR AAIKFRGSDA DINFNIADYQ EDINQMKSLS  240
KEEFVHILRR QSTGFARGSS KYRGVTLHKC GRWEARMGQL LGKKAYDVAA LRCNGSEAAT  300
NFEPSTYEGD VASHPNNDAS GHELDLSLTI DSSSDYNPKR NESSSHDGNF KGGGPKLVYP  360
TYATGGGQVP SAHSQPSMPA SYPPMSHGLA VHSGGYLPMS YEVMERSVAA VASPRMPNWG  420
WQHSQGHGST ISRLPPFSSA ASSGFSLSSS VTPATSLASL QLQQPHQSSC YQNNYRKS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024463450.11e-115ethylene-responsive transcription factor RAP2-7 isoform X3
TrEMBLA0A2K1ZBQ21e-113A0A2K1ZBQ2_POPTR; Uncharacterized protein
STRINGPOPTR_0008s04490.11e-110(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28550.22e-79related to AP2.7