PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0335s0013.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family TALE
Protein Properties Length: 743aa    MW: 81838.8 Da    PI: 7.2342
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0335s0013.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.82.1e-095766131954
                          HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
             Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                          Fe   ++yp+ +++  LA+++gLt +qV++WF N R +
  Kalax.0335s0013.1.p 576 FEHflHPYPTDTDKHLLATQTGLTRSQVSNWFINARVR 613
                          664459******************************88 PP
2BELL98.74.7e-32429498372
                 BELL   3 qelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                           + q kkakLl +l+eV +rY+qy++q+q+v+s+Fe vagl +a+pY+s Alk++SrhF  Lk ai+ q+
  Kalax.0335s0013.1.p 429 PDYQLKKAKLLYMLDEVTRRYRQYYHQMQMVVSAFESVAGLAAATPYVSSALKTVSRHFNHLKHAISVQL 498
                          5789**************************************************************9996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005744.8E-38332496IPR006563POX domain
PfamPF075262.1E-39337495IPR006563POX domain
PROSITE profilePS5007111.92554617IPR001356Homeobox domain
SMARTSM003893.1E-9557621IPR001356Homeobox domain
CDDcd000867.34E-13557618No hitNo description
SuperFamilySSF466898.98E-17559623IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.5E-28560621IPR009057Homeodomain-like
PfamPF059202.3E-17574613IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 743 aa     Download sequence    Send to blast
MDAFMKRNFI SDQSHVAQQS RREKLRVQHQ HRSPSRSGGD RVDDYTSSLE VVQPVFSRDL  60
NQVGDNEINA DVNLMYQHPT RISSEQACTF AGNSTNLVLS GVDGSLRPRR ENYMENCGVW  120
KSVGGSRENA SVGVATDLSA FEMRAKLSTT GQLQSQFQYG EVSFDPQSDY RNALSDEVTT  180
AVAELQSVGG STCDYWGSYG GNHEHVRIVP YGGYQLDGEP LPNGSTWNGE MSSLHSRIDQ  240
MVVDSHSQGL SLSLCSNPAT TMVAGSQYGD ARIPQSIPLR TIANVSYEEN AKAVGRTNFI  300
RTANVGQGDS LQDQVGPSSS YHRQSGPVGP FTGYATILKS SKFLKPAQQL LNEYCGVIGM  360
LASSSTVAVS ERNTGETGEL ATAGISIESE VESTNAGDTS GLSRSAHQDS HEIINGATSS  420
LGPGESHRPD YQLKKAKLLY MLDEVTRRYR QYYHQMQMVV SAFESVAGLA AATPYVSSAL  480
KTVSRHFNHL KHAISVQLWR IKTFLGENFS SPPSGIRNNK GGDLNAKRLK LNEHYCFQRH  540
SYGGSNMGLL EPQQHIWRPQ RGLPERAVSV LKAWLFEHFL HPYPTDTDKH LLATQTGLTR  600
SQVSNWFINA RVRLWKPMVE EIHMLETKGL AERDSNAVKD GNRSANVDEP HPKADHSLHK  660
MAANSTACVS LECSGMDEGM TSISRYHQTA HGHEISGIGS VSLTLGLRQS AGNHHQQSPY  720
FHQQQDRMRR HLEGHTVHEY AG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4xrs_A4e-16563620158Homeobox protein Meis1
4xrs_B4e-16563620158Homeobox protein Meis1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27990.12e-81BEL1-like homeodomain 8