PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0334s0026.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family MYB
Protein Properties Length: 421aa    MW: 46623 Da    PI: 7.0963
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0334s0026.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding537.9e-171461148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         +g W++eEd++l++ ++++G g+W+++++  g+ R++k+c++rw +yl
  Kalax.0334s0026.1.p 14 KGLWSPEEDDKLLRHITKYGHGCWSSVPKLAGLQRCGKSCRLRWINYL 61
                         678*******************************************97 PP
2Myb_DNA-binding47.25.3e-1567110146
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                          rg++++eE+ ++v++++ lG++ W+ Ia+ ++ gRt++++k+ w++
  Kalax.0334s0026.1.p  67 RGAFSQEEENIIVELHAVLGNR-WSQIAAQLP-GRTDNEIKNLWNS 110
                          89********************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.6E-27664IPR009057Homeodomain-like
PROSITE profilePS5129418.344961IPR017930Myb domain
SuperFamilySSF466894.12E-2912108IPR009057Homeodomain-like
SMARTSM007176.1E-131363IPR001005SANT/Myb domain
PfamPF002495.1E-151461IPR001005SANT/Myb domain
CDDcd001677.07E-121761No hitNo description
PROSITE profilePS5129425.83162116IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.0E-2565116IPR009057Homeodomain-like
SMARTSM007175.5E-1366114IPR001005SANT/Myb domain
PfamPF002492.0E-1367111IPR001005SANT/Myb domain
CDDcd001671.30E-969109No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 421 aa     Download sequence    Send to blast
MGRHSCCYKQ KLRKGLWSPE EDDKLLRHIT KYGHGCWSSV PKLAGLQRCG KSCRLRWINY  60
LRPDLKRGAF SQEEENIIVE LHAVLGNRWS QIAAQLPGRT DNEIKNLWNS CLKKKLRQKG  120
IDPNTHKPIS EMEAEQERSA TEAAAISLQA SYENNKNNMV SAAGSDEVIS MHLIDASDSH  180
NMNNAVFIDN NYLSSFEANS KFSHSMTQDF FVDRCGRSAT SCGGQPDMLG EAYLSLLAPL  240
SLTNTTQASN ISFNLGSRSS GSSPIPDDSQ FNNNLLPSMF PSISNSMILT NTTGARPCSV  300
ISDTDQSLGS FDWDQRQNGT NACSCLWEMA TAKSSQFEEA KWSAYLQNTS SSFGTLQSGN  360
SNLFSGGEMI KPEPVRYGSS GGASLLWHHQ MNQQQQHHSS PSDVFAKDLQ RLKMAFEQTF  420
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-29121165108B-MYB
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1111117LKKKLRQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021639753.11e-106transcription factor MYB61-like
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01680.32e-89myb domain protein 55