PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0334s0010.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family GRAS
Protein Properties Length: 373aa    MW: 41904.6 Da    PI: 5.8697
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0334s0010.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS118.21e-36163722374
                 GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPil 91 
                           +lL + Aea ++++++l + + + + ++a p g++m+Rl +y+ +         +++ y+ l+ +++      +   a+k+f++++P+ 
  Kalax.0334s0010.1.p  16 AHLLKAHAEATEAEHTRLMEVIQTCVLDRAGPVGETMERLSFYLFKP--------QPQ-YSYLKQESQ-----PNFDVAYKAFYQLFPYG 91 
                          68999999999999999999999999999***********9997543........233.333333333.....3556789********** PP

                 GRAS  92 kfshltaNqaIleavege.ervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnv 180
                          ++ h++aN+aIlea+  + ++v i+Dfd++ G+QW++L+ +La ++++   l + +++     + +  e  ++rL + A+++  +++ + 
  Kalax.0334s0010.1.p  92 RVPHIAANSAILEALPAHaSTVNIVDFDMGDGVQWAPLIATLARQNKE---LSLMAIKW---AEDDDFEDARRRLVSHARSVAAKLRVQE 175
                          ***************988799**********************97665...88888888...46899**********************9 PP

                 GRAS 181 lvak.rledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvksl....sPkvvvvveqeadhnse.sFlerflealeyy 264
                          ++++  +++++  + r+ +    a n++++l ++   ++ ++++ +++L + k+     +  ++++ + ead n+  ++   f + l  +
  Kalax.0334s0010.1.p 176 VAMEdLVSEIKRISKRCAQAPWFAFNCMVSLPHMI--KGRSKEKVRQFLTVAKDStnggNRGIITFGDGEADSNKLsNYSSFFERQLARH 263
                          8555255666666668999***************9..555666689****999752222568***********8862566666779**** PP

                 GRAS 265 salfdsleaklpres.eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrve. 352
                           al++s+e ++++++ e+++ +E  +l+++i++    ++ e   +++  e   ++  + G++ ++l++++ ++a+ l+++ ++  y++  
  Kalax.0334s0010.1.p 264 QALLESVEWTFSEQQlEAKVAIECLFLAPSISSHGWLQKWE---DMN-EEPNVRAAATLGLEGLRLGQTTLTEANQLVKRGEDSSYTLRl 349
                          *************9999999***********9987777777...333.3444567889************************88899888 PP

                 GRAS 353 .eesgslvlgWkdrpLvsvSaWr 374
                           e+ +++vl W++ pLv +S Wr
  Kalax.0334s0010.1.p 350 gEDVNEMVLQWRGTPLVKLSTWR 372
                          8*********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098517.9881350IPR005202Transcription factor GRAS
PfamPF035143.5E-3416372IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 373 aa     Download sequence    Send to blast
MTNAPSELAD NELSLAHLLK AHAEATEAEH TRLMEVIQTC VLDRAGPVGE TMERLSFYLF  60
KPQPQYSYLK QESQPNFDVA YKAFYQLFPY GRVPHIAANS AILEALPAHA STVNIVDFDM  120
GDGVQWAPLI ATLARQNKEL SLMAIKWAED DDFEDARRRL VSHARSVAAK LRVQEVAMED  180
LVSEIKRISK RCAQAPWFAF NCMVSLPHMI KGRSKEKVRQ FLTVAKDSTN GGNRGIITFG  240
DGEADSNKLS NYSSFFERQL ARHQALLESV EWTFSEQQLE AKVAIECLFL APSISSHGWL  300
QKWEDMNEEP NVRAAATLGL EGLRLGQTTL TEANQLVKRG EDSSYTLRLG EDVNEMVLQW  360
RGTPLVKLST WR*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010653403.11e-118PREDICTED: nodulation-signaling pathway 2 protein
TrEMBLA0A438GC471e-119A0A438GC47_VITVI; Nodulation-signaling pathway 2 protein
STRINGEOY071071e-116(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60630.14e-11GRAS family protein