PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kalax.0334s0001.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | GATA | ||||||||
Protein Properties | Length: 148aa MW: 16042.6 Da PI: 10.6982 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 55.7 | 6.9e-18 | 19 | 52 | 1 | 34 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 C+ Cgt TplWR+gp g+k+LCnaCG+++rk++ Kalax.0334s0001.1.p 19 CAMCGTARTPLWRSGPAGPKSLCNACGIKQRKRK 52 9*******************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57716 | 1.28E-12 | 11 | 59 | No hit | No description |
SMART | SM00401 | 2.4E-12 | 13 | 67 | IPR000679 | Zinc finger, GATA-type |
PROSITE profile | PS50114 | 11.873 | 13 | 49 | IPR000679 | Zinc finger, GATA-type |
Gene3D | G3DSA:3.30.50.10 | 2.0E-14 | 17 | 52 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 6.03E-11 | 18 | 52 | No hit | No description |
Pfam | PF00320 | 1.4E-15 | 19 | 52 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 148 aa Download sequence Send to blast |
MDLSQKETAM LSDETKKRCA MCGTARTPLW RSGPAGPKSL CNACGIKQRK RKALMCKNPD 60 KKKQRQPTTT NPAASPPSTS TEPPSKSKPG LEKSCATNSR QSVKVGLAAF GKDLALLQRQ 120 RSLRRQRSEE EEAAMLLMSL SCSYVLG* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G06740.1 | 1e-18 | GATA transcription factor 15 |
Link Out ? help Back to Top | |
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Phytozome | Kalax.0334s0001.1.p |