PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0333s0061.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family MYB
Protein Properties Length: 358aa    MW: 40385 Da    PI: 6.3484
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0333s0061.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.23.5e-171462148
                         TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                         rg+W++eEd +l+d+++++G+g +W + ++++g+ R++k+c++rw++yl
  Kalax.0333s0061.1.p 14 RGPWSPEEDAKLKDYIEKHGTGgNWIALPHKIGLQRCGKSCRLRWLNYL 62
                         89*********************************************97 PP
2Myb_DNA-binding37.36.3e-1269111246
                          SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
      Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                          g +++eEd ++  +    G++ W+ Ia+ ++ gRt++++k++w++
  Kalax.0333s0061.1.p  69 GGFSEEEDNIICSLYISIGSR-WSIIAAQLP-GRTDNDIKNYWNT 111
                          569******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.625962IPR017930Myb domain
SuperFamilySSF466897.26E-2712109IPR009057Homeodomain-like
SMARTSM007171.7E-121364IPR001005SANT/Myb domain
PfamPF002496.9E-161462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.2E-251569IPR009057Homeodomain-like
CDDcd001672.96E-101662No hitNo description
PROSITE profilePS5129421.34963117IPR017930Myb domain
SMARTSM007174.6E-1167115IPR001005SANT/Myb domain
PfamPF002491.5E-1069111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.1E-2370117IPR009057Homeodomain-like
CDDcd001674.93E-871113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 358 aa     Download sequence    Send to blast
MGRAPCCDKD SVKRGPWSPE EDAKLKDYIE KHGTGGNWIA LPHKIGLQRC GKSCRLRWLN  60
YLRPNIKHGG FSEEEDNIIC SLYISIGSRW SIIAAQLPGR TDNDIKNYWN TKLKKKLLGR  120
HKQSSISSRL IPSTHSKDPN DVQEDPQQHA LSNSALERLQ LHLQLQSLQN PTSCYNNNPT  180
LWPRLHPLQE KMIQQNLLFI NQNETLIPST VVVSSQQQAV GHENVSDYSF YKPQQLDATY  240
TKLMTSSSEA VSDEYFGSIS SSTVVPKLDA GAADLNPKTF QDEYESFLSS DKMAELVSQV  300
DEFDYFKEAD SSKDQSSSFI WGSSNEFDSK SPTSTSWNTS SRLPCDHQMF QDFTFGL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-24141177108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factors that activates genes required for endodermal differentiation but represses genes involved in proliferative divisions, thus regulating the transition from proliferation to differentiation in root endodermis (PubMed:26371322). Required for Casparian strip formation by positively regulating the expression of the Casparian strip genes CASP1, PER64 and ESB1 and other endodermis-specific genes, thus triggering correct localized lignin biosynthesis in root endodermis and subsequently regulating global ion homeostasis (PubMed:26124109, PubMed:26371322). {ECO:0000269|PubMed:26124109, ECO:0000269|PubMed:26371322}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Directly up-regulated by SCARECROW (SCR), as part of the differentiation program controlled by SHORT-ROOT (SHR). {ECO:0000269|PubMed:24517883, ECO:0000269|PubMed:26371322}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007224828.11e-126transcription factor MYB36
SwissprotQ9FKL21e-101MYB36_ARATH; Transcription factor MYB36
TrEMBLM5XIY11e-124M5XIY1_PRUPE; Uncharacterized protein
STRINGEMJ260271e-125(Prunus persica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57620.11e-91myb domain protein 36
Publications ? help Back to Top
  1. Fernández-Marcos M, et al.
    Control of Arabidopsis lateral root primordium boundaries by MYB36.
    New Phytol., 2017. 213(1): p. 105-112
    [PMID:27891649]