PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kalax.0333s0057.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | CO-like | ||||||||
Protein Properties | Length: 396aa MW: 42592.9 Da PI: 6.502 | ||||||||
Description | CO-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 24.5 | 5.8e-08 | 33 | 64 | 4 | 35 |
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHk 35 + C+ +++ + lfC+ ++ +lC C + +H Kalax.0333s0057.1.p 33 KPCDVCKSASALLFCKPDSAFLCVACDTRIHA 64 67***************************993 PP | |||||||
2 | zf-B_box | 24.5 | 5.5e-08 | 74 | 119 | 2 | 41 |
zf-B_box 2 eerkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41 + ++C+ +e+ +++ C+ + lC +C +H+ H++v+ Kalax.0333s0057.1.p 74 RLWMCEVCEQVPASVTCKADAAALCVSCDADIHSAnplsrkHDRVQ 119 5789*****************************6688888898876 PP | |||||||
3 | CCT | 69.6 | 8e-24 | 325 | 369 | 1 | 45 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqae 45 Rea++lRY+eKrk+R+FeK+irY+sRKa+Ae+RpR+KGrFvk+ae Kalax.0333s0057.1.p 325 REARVLRYREKRKNRRFEKTIRYASRKAYAETRPRIKGRFVKRAE 369 9*****************************************975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50119 | 9.655 | 30 | 77 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 3.4E-12 | 30 | 77 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 3.0E-6 | 33 | 73 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 3.15E-8 | 34 | 77 | No hit | No description |
PROSITE profile | PS50119 | 9.997 | 73 | 120 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 1.1E-5 | 75 | 119 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 5.08E-8 | 76 | 120 | No hit | No description |
SMART | SM00336 | 1.1E-7 | 78 | 120 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS51017 | 16.807 | 325 | 367 | IPR010402 | CCT domain |
Pfam | PF06203 | 9.9E-18 | 325 | 367 | IPR010402 | CCT domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 396 aa Download sequence Send to blast |
MGILVEESCV KGYPVVGGGG GGGGLGVWPI AAKPCDVCKS ASALLFCKPD SAFLCVACDT 60 RIHAVNKLAS RHERLWMCEV CEQVPASVTC KADAAALCVS CDADIHSANP LSRKHDRVQL 120 VPFYESAESI IKKSSAANAA AASGNGTNNL VNFLVPGADE EEDQVDDVSW FLPPQKAAVA 180 AVAAMNPSEG KAAGGEMFFS DFDHLLDFEN PNQVYLNFKN NQHVGGSDSV VPVQIKPETV 240 SKISSFDRCF DIDFCKSKLP FYNFDQSNNH SVSSSALDIG LVPDGGSASD ISYSLGKHIK 300 SGGGEAHGVD SSSSTQATQL TGLDREARVL RYREKRKNRR FEKTIRYASR KAYAETRPRI 360 KGRFVKRAEP DLELDSLFNS GSIHFFEGYG VVPSY* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024928544.1 | 1e-130 | zinc finger protein CONSTANS-LIKE 5 | ||||
Refseq | XP_024928545.1 | 1e-130 | zinc finger protein CONSTANS-LIKE 5 | ||||
TrEMBL | F6GXA6 | 1e-126 | F6GXA6_VITVI; CONSTANS-like protein 5 | ||||
STRING | VIT_11s0052g01800.t01 | 1e-127 | (Vitis vinifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G57660.1 | 8e-98 | CONSTANS-like 5 |
Link Out ? help Back to Top | |
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Phytozome | Kalax.0333s0057.1.p |