PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0333s0022.2.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family HB-PHD
Protein Properties Length: 519aa    MW: 58177.7 Da    PI: 5.8077
Description HB-PHD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0333s0022.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.72.3e-092933361053
                          HHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHH CS
             Homeobox  10 eqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRa 53 
                            +e L ++F+++  ps++ +  L+k lgL+ ++V  WF+N R+
  Kalax.0333s0022.2.p 293 VAVEKLRQVFAEDELPSKSVKDNLSKLLGLSPEKVNKWFKNARY 336
                          56899*************************************97 PP
2PHD33.31.1e-111872150
                         SBTTTSS..TCTTSSEEEBSS.SSSEEETTTSTSSSSHHSHHSS..TBSSHHHHT CS
                  PHD  1 rCkvCgk..sdeegelvlCdg.CkewfHlkClglkleseekpeg..ewlCeeCke 50
                         +C+ C+   +  +++++lCdg C+ +fH+kCl+++l+++++p +   w+C+ C++
  Kalax.0333s0022.2.p 18 ICAKCKLreAFPDNDIILCDGiCNCAFHQKCLDPPLSTDNIPPEdqGWFCKFCQC 72
                         588888854455********88*******************99999*******97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF579032.44E-131075IPR011011Zinc finger, FYVE/PHD-type
Gene3DG3DSA:3.30.40.103.1E-111473IPR013083Zinc finger, RING/FYVE/PHD-type
PROSITE profilePS5001610.0771673IPR019787Zinc finger, PHD-finger
SMARTSM002491.0E-71871IPR001965Zinc finger, PHD-type
PfamPF006283.4E-91872IPR019787Zinc finger, PHD-finger
PROSITE patternPS0135901970IPR019786Zinc finger, PHD-type, conserved site
CDDcd155043.00E-271970No hitNo description
Gene3DG3DSA:1.10.10.601.9E-11276335IPR009057Homeodomain-like
PROSITE profilePS5007112.082281341IPR001356Homeobox domain
SuperFamilySSF466893.04E-10283348IPR009057Homeodomain-like
SMARTSM003892.4E-10283345IPR001356Homeobox domain
CDDcd000861.09E-9284336No hitNo description
PfamPF000467.0E-7293336IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009733Biological Processresponse to auxin
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 519 aa     Download sequence    Send to blast
MEDSLIAPDG SVHHEHIICA KCKLREAFPD NDIILCDGIC NCAFHQKCLD PPLSTDNIPP  60
EDQGWFCKFC QCRMDIIDVM NAHLGTHISM GSNWQDIFSE EASIVDGADD PPHIGEVQWP  120
SDDSNDDDYD PEKKECSYST GLMEAEDSSS LSRCDSVSIS WSFEEEAFSD LQGSQHSGMP  180
PVMNSACFQS CADSAGTMTD MTIEGCRQRR TVDYKKLYIE MFGKDAPGNE QLSEDEDWGP  240
GKRIRKEKES YAASTLMTLF SSENIDPDDA VQAKEEHHQG AHSRRPLFRI PPVAVEKLRQ  300
VFAEDELPSK SVKDNLSKLL GLSPEKVNKW FKNARYLALR NRKMGSSIGC PNPTGTCSNE  360
SPLNERCVEN KVICGDTLNG GSSSSLVNTS MIKQSGYRAR SLSNLRKKKR HRRTLLGLSS  420
CNTTKVMMDF NENVSLKQQL QLLKSASKKR IWNHLDFKEG FNRRPTRVEM EMERLCTIKC  480
RVDGMLENLS VLLKQQKSGT PKAEAVVYVP IAEVKEKF*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002269263.11e-151PREDICTED: pathogenesis-related homeodomain protein
RefseqXP_010656753.11e-151PREDICTED: pathogenesis-related homeodomain protein
TrEMBLD7UBI51e-150D7UBI5_VITVI; Uncharacterized protein
STRINGVIT_11s0103g00650.t011e-151(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29940.21e-52pathogenesis related homeodomain protein A