PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0333s0009.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family WRKY
Protein Properties Length: 233aa    MW: 25892.8 Da    PI: 6.4011
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0333s0009.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY98.15.8e-3144102259
                          --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                           D ++WrKYGqK++kgs++pr+YYrC+++ gC++kk+vers++d +++++tY+++Hnh+
  Kalax.0333s0009.1.p  44 ADSWSWRKYGQKPIKGSPYPRGYYRCSTSkGCSAKKQVERSRTDASMLIVTYTSTHNHP 102
                          69************************9988****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.8E-3236104IPR003657WRKY domain
SuperFamilySSF1182902.88E-2641104IPR003657WRKY domain
SMARTSM007744.0E-3643103IPR003657WRKY domain
PROSITE profilePS5081131.57145104IPR003657WRKY domain
PfamPF031063.2E-2645102IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    Send to blast
MEGSPQPSPE TQAAKKGKPL HKTVVTLKVV AASCGKQKNE GPPADSWSWR KYGQKPIKGS  60
PYPRGYYRCS TSKGCSAKKQ VERSRTDASM LIVTYTSTHN HPGPNLTTQN REEILEPSTV  120
EIGAEPKVEQ PAAADEQRQN NTENFNYMEP PQDVTGHIDR SPFSVVLDST HESLGVLFHE  180
EPISHPPIRT APKQESDGYD FFDELEELPM SLPFTSFTKS SFYDDRILVR PS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B5e-22441041779Disease resistance protein RRS1
5w3x_D5e-22441041779Disease resistance protein RRS1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002270750.34e-79PREDICTED: probable WRKY transcription factor 65
TrEMBLD7U2J09e-78D7U2J0_VITVI; Uncharacterized protein
STRINGVIT_07s0005g01520.t011e-78(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34830.12e-37WRKY DNA-binding protein 35