PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kalax.0332s0014.3.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | NF-YC | ||||||||
Protein Properties | Length: 234aa MW: 26392.1 Da PI: 6.0779 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 174.7 | 9.4e-55 | 48 | 151 | 1 | 101 |
NF-YC 1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtd 87 ql+sfw++q ie++tdfknh+lPlarikki+kadedv+misaeaPv++++ace+fi+eltlrsw+h+eenkrrtl+k+diaaa+ rtd Kalax.0332s0014.3.p 48 QLQSFWANQhqeIERVTDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFARACEMFIFELTLRSWNHTEENKRRTLQKNDIAAAIGRTD 137 89*****999999***************************************************************************** PP NF-YC 88 ifdflvdivprdel 101 ifdflvdivpr++l Kalax.0332s0014.3.p 138 IFDFLVDIVPREDL 151 ***********987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.150.60 | 8.0E-4 | 32 | 72 | IPR001606 | ARID DNA-binding domain |
SuperFamily | SSF47113 | 1.04E-32 | 41 | 142 | IPR009072 | Histone-fold |
Pfam | PF00808 | 2.4E-21 | 70 | 133 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene3D | G3DSA:1.10.20.10 | 8.1E-37 | 73 | 133 | IPR009072 | Histone-fold |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 234 aa Download sequence Send to blast |
MDHQGQGQQP AMGAAPGAAS AQAGGQLPQH QLAYQHINPL QQQQLQQQLQ SFWANQHQEI 60 ERVTDFKNHS LPLARIKKIM KADEDVRMIS AEAPVIFARA CEMFIFELTL RSWNHTEENK 120 RRTLQKNDIA AAIGRTDIFD FLVDIVPRED LKDEMLGSIP RGSIPVGAPA DMLPYPYMPM 180 QHMPQVGTPG MIMGKPMMDP SMYVQQPHPY MAPQMWPQPQ PQQQQQEQSS SDQ* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5g49_B | 7e-60 | 55 | 148 | 2 | 95 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 120 | 126 | RRTLQKN |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters (By similarity). Interacts with REF6 to directly regulate SOC1 transcription in response to flowering signals from photoperiod and gibberellic acid pathways (PubMed:25105952). {ECO:0000250, ECO:0000269|PubMed:25105952}. | |||||
UniProt | Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019440553.1 | 1e-120 | PREDICTED: nuclear transcription factor Y subunit C-3-like isoform X2 | ||||
Refseq | XP_019440554.1 | 1e-120 | PREDICTED: nuclear transcription factor Y subunit C-3-like isoform X2 | ||||
Swissprot | Q8L4B2 | 3e-82 | NFYC9_ARATH; Nuclear transcription factor Y subunit C-9 | ||||
Swissprot | Q9ZVL3 | 3e-82 | NFYC3_ARATH; Nuclear transcription factor Y subunit C-3 | ||||
TrEMBL | A0A1S2XUA5 | 1e-118 | A0A1S2XUA5_CICAR; nuclear transcription factor Y subunit C-3-like | ||||
STRING | XP_004494629.1 | 1e-119 | (Cicer arietinum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G08970.4 | 2e-77 | nuclear factor Y, subunit C9 |
Link Out ? help Back to Top | |
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Phytozome | Kalax.0332s0014.3.p |