PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0330s0026.8.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family FAR1
Protein Properties Length: 773aa    MW: 88506.2 Da    PI: 7.2429
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0330s0026.8.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR182.95.4e-2629114291
                 FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 
                          +Y+eYAk vGF + k +s++s+ ++e+++++f C ++g++++++++     ++r++ ++gCka+++vk++++gkw++++++++HnHel p
  Kalax.0330s0026.8.p  29 YYKEYAKLVGFGTAKLSSRRSRASKEFIDAKFSCIRYGNKQQSDDA----INPRPSPKIGCKASMHVKRRQTGKWYIYNFVKDHNHELLP 114
                          9***************************************999877....9************************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031018.4E-2429114IPR004330FAR1 DNA binding domain
PfamPF105511.8E-25227319IPR018289MULE transposase domain
PROSITE profilePS5096610.237507543IPR007527Zinc finger, SWIM-type
PfamPF044341.1E-6517541IPR007527Zinc finger, SWIM-type
SMARTSM005751.1E-5518545IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 773 aa     Download sequence    Send to blast
MESSEATGNV TSEPHRELEF ESHEDAYSYY KEYAKLVGFG TAKLSSRRSR ASKEFIDAKF  60
SCIRYGNKQQ SDDAINPRPS PKIGCKASMH VKRRQTGKWY IYNFVKDHNH ELLPEQAHFF  120
RSHRNVDSIK NDLRIRKRKI LAAGSKQFSA YQNVDFLEGY IRNQHDKGQI LSLESGDSQM  180
LLEFCMYMQE KNPKFFYAMD FNEEHRLRNV FWVSSKGVDD YSYFSDVVSV DTTYVTAKYK  240
IPLVIIIGVN NHIQPTLLGC GLIADETLYT FAWLLQTWLI SMGGRAPRVI LTDQNGALKQ  300
AVAAVFPESR HCFALWNVLE KIPSKLEYVI RWQDNFVIKL NKCIYKSLTE EQFESRWSKL  360
LDRFTLREDE WVQSLYEDRR QWVPTFMRDI SFAGLSAPSR AESLNTWFDN YIDAYSSLRE  420
FIERYKLIVE DMHEEEAKAN FDGWHEIPDL KTPSPFEKQT LLVYTHEIFK KFQIEVLGAA  480
ACHLKKENDY GTIATYSVKD FADNQVFMVT WDQTKLDIGC SCRSFEYKGY VCRHAIVVLQ  540
MSGVFSIPFK YILQRWTNVA VSRHAMSDRL DEVQAKIRRF NDLCRRAIIL GEEGSLSEQS  600
YNVALIAIED ALKQFKNTSS LDCDSRPHSA LRQAFSGNEE VNDGSVAAAV HEVPGTSLTS  660
SSKSQKRSDA GNKKFESYES MMGKVQPVQG LVNAGSQVGY AFMDNAHATS LSPNAPLVAQ  720
HNMAPVRLQS LPAHIQNTMP AQYHSSIPPY VEDKHIQVLP LVERPGGDQK DQ*
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription activator involved in regulating light control of development.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010655208.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 4 isoform X2
SwissprotQ6NQJ70.0FRS4_ARATH; Protein FAR1-RELATED SEQUENCE 4
TrEMBLF6GYH10.0F6GYH1_VITVI; Uncharacterized protein
STRINGVIT_09s0054g01830.t010.0(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76320.20.0FAR1-related sequence 4
Publications ? help Back to Top
  1. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]