PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0329s0049.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family MYB
Protein Properties Length: 288aa    MW: 32212.8 Da    PI: 9.0806
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0329s0049.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding231.8e-074083344
                         SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
      Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                         +W++eE + + +a + +  +   +W ++a++++ g+t  +++  +
  Kalax.0329s0049.1.p 40 KWSQEENKMFENALAVYDRDspdRWQKVAAMIP-GKTVGEVVKQY 83
                         8*****************99*************.***99987765 PP
2Myb_DNA-binding44.82.9e-14145189347
                          SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                          +WT+eE++l++ + k++G+g+W+ I+r +  +Rt+ q+ s+ qky
  Kalax.0329s0049.1.p 145 PWTEEEHKLFLLGLKKYGKGDWRNISRNFVITRTPTQVASHAQKY 189
                          8*****************************99************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512938.3163691IPR017884SANT domain
SMARTSM007173.2E-73789IPR001005SANT/Myb domain
SuperFamilySSF466891.29E-104093IPR009057Homeodomain-like
CDDcd001677.96E-74086No hitNo description
PfamPF002497.4E-64083IPR001005SANT/Myb domain
PROSITE profilePS5129420.486138194IPR017930Myb domain
SuperFamilySSF466897.4E-17139193IPR009057Homeodomain-like
TIGRFAMsTIGR015571.4E-17141193IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.603.1E-12142189IPR009057Homeodomain-like
SMARTSM007175.3E-13142192IPR001005SANT/Myb domain
CDDcd001672.36E-11145190No hitNo description
PfamPF002491.0E-12145189IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    Send to blast
MKFEMEIRSP GYGYPENNQQ QNSRQHRKQH HQQQAESLSK WSQEENKMFE NALAVYDRDS  60
PDRWQKVAAM IPGKTVGEVV KQYEALEADV SSIEAGLVPV PGYACPAFTL DWVGGDGKSY  120
DGFSQGYGGG KRLRGVEQER KKGVPWTEEE HKLFLLGLKK YGKGDWRNIS RNFVITRTPT  180
QVASHAQKYF IRQLSGGKDK RRASIHDITT VNLSESQTPL SPDQLARGQH SPEMPFQWGG  240
SQSSSGHGSS MDFNGVYGFS SNRSAQGMLG SYMDAYQMQS ATQYPQV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A2e-16411031173RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3621841e-42AK362184.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2003C15.
GenBankAK3631921e-42AK363192.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2013G01.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021278855.11e-110transcription factor DIVARICATA
SwissprotQ8S9H71e-100DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLA0A0D2TGI11e-107A0A0D2TGI1_GOSRA; Uncharacterized protein
TrEMBLA0A1U8JLE11e-107A0A1U8JLE1_GOSHI; transcription factor DIVARICATA-like
STRINGGorai.009G093700.11e-108(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38090.13e-83MYB family protein
Publications ? help Back to Top
  1. Galego L,Almeida J
    Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers.
    Genes Dev., 2002. 16(7): p. 880-91
    [PMID:11937495]
  2. Almeida J,Rocheta M,Galego L
    Genetic control of flower shape in Antirrhinum majus.
    Development, 1997. 124(7): p. 1387-92
    [PMID:9118809]