PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0329s0014.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family GRAS
Protein Properties Length: 624aa    MW: 69813.8 Da    PI: 5.9081
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0329s0014.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS367.51.8e-1122476171373
                 GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPi 90 
                          l+e+L +cA+av+s d + a++lL ++++++sp+gd++qRla+yf++ L+arl++s+++l++ ++ ++ +    ++ l+a+kl++  +P+
  Kalax.0329s0014.1.p 247 LREVLSQCAQAVASYDVRTANELLGKIRQQSSPYGDANQRLAHYFANSLEARLVGSSTHLFSLVRLRAPA----ADILKAYKLYVTSCPF 332
                          6789*********************************************************999999996....9*************** PP

                 GRAS  91 lkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfef 178
                           k+s++ aN+ + + + +++ +HiiDf+i +G+QWp+L+q L++Rp+gpp+lRiTg++ p++g   +e++eetg+rLak++++++vpfe+
  Kalax.0329s0014.1.p 333 KKISNVYANRLVDKLAVKATSLHIIDFGILYGFQWPCLIQRLSQRPGGPPRLRITGIDLPQPGfrPSERVEETGDRLAKYCKKFNVPFEY 422
                          **************************************************************9*************************** PP

                 GRAS 179 nvlvakrledleleeLrvkp.gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysal 267
                          ++ +a+++e+++le+L++   +++++Vn+ ++l +l+de+vs++++rd+vLkl+++++P++++ +  +  ++++ Fl+rf e+l ++sal
  Kalax.0329s0014.1.p 423 TP-IAQKWESIKLEDLNLGDrHDMVVVNCLYRLRNLPDETVSVTNPRDTVLKLIRKINPDIFIQAAVNGTYDAPFFLTRFRETLFHFSAL 511
                          **.7*************9877********************************************************************* PP

                 GRAS 268 fdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgs 357
                          +d +ea++p+e++er  +E+e+lgr+++n++aceg++r+ r et+++W++r+++aGF+++pl+++ +k +++ +r+ + + + v+e++++
  Kalax.0329s0014.1.p 512 YDIFEATVPSENQERLLYEKEVLGRDAMNIIACEGSQRIDRPETYRRWQSRIRRAGFSQLPLDQDLMKLVRSKVRREYHKDFVVDEDKQW 601
                          ******************************************************************************888********* PP

                 GRAS 358 lvlgWkdrpLvsvSaW 373
                          l++gWk+r L+++++W
  Kalax.0329s0014.1.p 602 LLQGWKGRILYALTVW 617
                          **************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098564.433221598IPR005202Transcription factor GRAS
PfamPF035146.4E-110247617IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
Sequence ? help Back to Top
Protein Sequence    Length: 624 aa     Download sequence    Send to blast
MEAAALMDPP IDFGFKAAAG LPCSKQILVN GYKLGGNMTP GDSGFSVDVG EYLVDAEFPP  60
YWNPGAGSGS GSSSPDGDEA EHDSNATLKF INDILMEEDW DGKKCMFQDC MGALQAAEKS  120
FSDALYGHDQ PGHAASGFDP GLAAGSTVSE PFEHSGSFSV VGIESSVSSS GTYSQAEERR  180
RSKYSATSPD ESSPAVEDEE VDDRFLLCDK DGECNALEQL IPQASEKKVS RRNRSKKGEK  240
KQQVVDLREV LSQCAQAVAS YDVRTANELL GKIRQQSSPY GDANQRLAHY FANSLEARLV  300
GSSTHLFSLV RLRAPAADIL KAYKLYVTSC PFKKISNVYA NRLVDKLAVK ATSLHIIDFG  360
ILYGFQWPCL IQRLSQRPGG PPRLRITGID LPQPGFRPSE RVEETGDRLA KYCKKFNVPF  420
EYTPIAQKWE SIKLEDLNLG DRHDMVVVNC LYRLRNLPDE TVSVTNPRDT VLKLIRKINP  480
DIFIQAAVNG TYDAPFFLTR FRETLFHFSA LYDIFEATVP SENQERLLYE KEVLGRDAMN  540
IIACEGSQRI DRPETYRRWQ SRIRRAGFSQ LPLDQDLMKL VRSKVRREYH KDFVVDEDKQ  600
WLLQGWKGRI LYALTVWIPT SQD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A5e-512316213382Protein SCARECROW
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012067006.10.0scarecrow-like protein 11
TrEMBLA0A4D9AM190.0A0A4D9AM19_SALSN; Uncharacterized protein
STRINGLus100407870.0(Linum usitatissimum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G46600.11e-175GRAS family protein