PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.0328s0016.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

Dof

Protein Properties

Length: 482aa MW: 51964.9 Da PI: 6.1944

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0328s0016.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	118.6	2.4e-37	119	178	2	61
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 ++k+++cprC s++tkfCy+nny+++qPryfC++C+ryWt GG+lrn+PvG+grrk+k+s Kalax.0328s0016.1.p 119 PDKIIPCPRCASMDTKFCYFNNYNVNQPRYFCRKCQRYWTSGGTLRNLPVGSGRRKSKSS 178 7899*****************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51257	5	1	35	No hit	No description
ProDom	PD007478	1.0E-27	112	176	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	4.0E-31	121	177	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	27.615	123	177	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	125	161	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 482 aa Download sequence Send to blast
MDDKNHIPEP SDPPIKLFGR SIAEPPPPPS AGGGCADGDA DVDEGRGCGI ECGSDDEGNL 60 GEEIYGHESA NDNPQTGNLQ DATSGANENL ETPVAQSKTA EENKSEDSNA PQEKTLKKPD 120 KIIPCPRCAS MDTKFCYFNN YNVNQPRYFC RKCQRYWTSG GTLRNLPVGS GRRKSKSSAV 180 HYSQISVPRE FAPNSNGLVA LDGSVLSFVA DKHKHAEQIY SPKVVEEARQ ASCPNGLCKA 240 KELKMKIPSV REAAILLDDN RSGSAGGSSN IENDGVGECE IRAETAQSYQ SFQPQMLCFP 300 APLWPPFPWT PSQYNCPVIP SPVNLRPGFP MPFYPAPMYM GCGMPGAWNT PWSPNPSPPS 360 SQPDPKSPTL GKHSRDGVDN AAKPGNTEDG EKQKEENPKP KPKSSIWVPK TLRINDLEEA 420 AKSSMWATLG IKPDNGKGHF RPFSALGVVE TERSRAASAT SSALLANPAA LSRSMSFRES 480 S*

Sequence ? help Back to Top

Protein Sequence Length: 482 aa Download sequence Send to blast

MDDKNHIPEP SDPPIKLFGR SIAEPPPPPS AGGGCADGDA DVDEGRGCGI ECGSDDEGNL  60
GEEIYGHESA NDNPQTGNLQ DATSGANENL ETPVAQSKTA EENKSEDSNA PQEKTLKKPD  120
KIIPCPRCAS MDTKFCYFNN YNVNQPRYFC RKCQRYWTSG GTLRNLPVGS GRRKSKSSAV  180
HYSQISVPRE FAPNSNGLVA LDGSVLSFVA DKHKHAEQIY SPKVVEEARQ ASCPNGLCKA  240
KELKMKIPSV REAAILLDDN RSGSAGGSSN IENDGVGECE IRAETAQSYQ SFQPQMLCFP  300
APLWPPFPWT PSQYNCPVIP SPVNLRPGFP MPFYPAPMYM GCGMPGAWNT PWSPNPSPPS  360
SQPDPKSPTL GKHSRDGVDN AAKPGNTEDG EKQKEENPKP KPKSSIWVPK TLRINDLEEA  420
AKSSMWATLG IKPDNGKGHF RPFSALGVVE TERSRAASAT SSALLANPAA LSRSMSFRES  480
S*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G47500.1	4e-45	cycling DOF factor 3

Link Out ? help Back to Top
Phytozome	Kalax.0328s0016.1.p